Variant report

Variant	rs60308920
Chromosome Location	chr1:165572926-165572927
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12128974	0.81[AFR][1000 genomes]
rs16848958	1.00[EUR][1000 genomes]
rs16849238	1.00[EUR][1000 genomes]
rs2348731	1.00[EUR][1000 genomes]
rs56946978	1.00[EUR][1000 genomes]
rs57266835	1.00[EUR][1000 genomes]
rs58365780	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58659239	1.00[EUR][1000 genomes]
rs61125729	1.00[EUR][1000 genomes]
rs73014618	1.00[EUR][1000 genomes]
rs73014649	1.00[EUR][1000 genomes]
rs73027023	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73027030	0.81[AFR][1000 genomes]
rs73027060	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73028710	1.00[EUR][1000 genomes]
rs7554080	0.81[AFR][1000 genomes]
rs9333395	0.85[AMR][1000 genomes]
rs9333396	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429902	chr1:165531342-165574342	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165568000-165574800	Weak transcription	Right Atrium	heart
2	chr1:165568200-165579600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:165571400-165573000	Weak transcription	Liver	Liver
4	chr1:165571400-165573000	Weak transcription	HepG2	liver
5	chr1:165572800-165573200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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