Variant report

Variant	rs12128974
Chromosome Location	chr1:165577150-165577151
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1011469	0.82[GIH][hapmap]
rs12119602	0.83[EUR][1000 genomes]
rs12125420	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12130157	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12131992	0.83[EUR][1000 genomes]
rs12133779	0.86[EUR][1000 genomes]
rs12142477	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16847331	0.85[CHB][hapmap];0.92[GIH][hapmap];0.86[TSI][hapmap]
rs16847398	0.83[EUR][1000 genomes]
rs16847570	0.92[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.89[JPT][hapmap];0.82[MEX][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1913836	0.92[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];0.82[MEX][hapmap];0.96[TSI][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4147146	0.84[CHB][hapmap];0.91[EUR][1000 genomes]
rs4147598	0.84[GIH][hapmap]
rs60308920	0.81[AFR][1000 genomes]
rs7554080	0.92[ASW][hapmap];0.92[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12128974	KLHDC9	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165568200-165579600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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