Variant report

Variant	rs12119602
Chromosome Location	chr1:165560168-165560169
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1011469	1.00[ASW][hapmap];0.92[CHB][hapmap];0.90[CHD][hapmap];0.84[GIH][hapmap];0.90[MEX][hapmap];0.83[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs1025159	0.83[CHB][hapmap]
rs12125420	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12126717	0.92[CHB][hapmap]
rs12128974	0.83[EUR][1000 genomes]
rs12130157	0.85[EUR][1000 genomes]
rs12131992	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12137629	0.92[CHB][hapmap]
rs12142477	0.82[EUR][1000 genomes]
rs12143824	0.92[CHB][hapmap]
rs1326374	0.83[CHB][hapmap]
rs16846623	0.92[CHB][hapmap];0.90[CHD][hapmap];1.00[MEX][hapmap]
rs16847073	0.83[AMR][1000 genomes]
rs16847331	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.96[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16847398	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16847570	0.92[CHB][hapmap];0.84[CHD][hapmap];0.89[GIH][hapmap]
rs1913836	0.92[CHB][hapmap];0.83[CHD][hapmap];0.86[GIH][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs2152818	0.92[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs285422	0.92[CHB][hapmap]
rs285438	0.92[CHB][hapmap];0.90[CHD][hapmap]
rs34201742	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs41267552	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs41267554	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4147146	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4147598	0.86[GIH][hapmap]
rs55890197	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6669449	0.92[CHB][hapmap];0.90[CHD][hapmap];1.00[MEX][hapmap]
rs7521982	0.90[CHB][hapmap]
rs7539622	0.82[ASW][hapmap];0.92[CHB][hapmap];0.90[CHD][hapmap];1.00[MEX][hapmap]
rs7554080	0.92[CHB][hapmap];0.87[CHD][hapmap];0.92[GIH][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs927844	0.92[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429902	chr1:165531342-165574342	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165547400-165566800	Weak transcription	Psoas Muscle	Psoas

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