Variant report

Variant	rs1326374
Chromosome Location	chr1:165509645-165509646
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165506382..165508384-chr1:165509040..165511193,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1011469	0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1025159	0.85[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap]
rs1157861	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12117066	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12126717	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12137629	0.84[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12143824	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12143868	0.80[ASN][1000 genomes]
rs1409413	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1425753	0.91[ASN][1000 genomes]
rs16846547	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16846623	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16846756	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16847073	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16847083	0.91[ASN][1000 genomes]
rs16847085	0.91[ASN][1000 genomes]
rs16847110	0.91[ASN][1000 genomes]
rs16847331	0.83[CHB][hapmap]
rs1913836	0.83[CHB][hapmap]
rs2152818	0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2252342	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2478262	0.81[ASN][1000 genomes]
rs2553637	0.81[ASN][1000 genomes]
rs285421	0.91[ASN][1000 genomes]
rs285422	0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs285435	0.97[ASN][1000 genomes]
rs285438	0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs285462	0.83[ASN][1000 genomes]
rs285467	0.83[ASN][1000 genomes]
rs285468	0.83[ASN][1000 genomes]
rs285473	0.81[ASN][1000 genomes]
rs285474	0.81[ASN][1000 genomes]
rs285478	0.81[ASN][1000 genomes]
rs285479	0.81[ASN][1000 genomes]
rs34201742	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs401457	0.83[ASN][1000 genomes]
rs41267552	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41267554	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4147146	0.91[CHB][hapmap]
rs55890197	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55957417	0.90[ASN][1000 genomes]
rs56201005	0.90[ASN][1000 genomes]
rs56277222	0.91[ASN][1000 genomes]
rs57799548	0.88[ASN][1000 genomes]
rs58058936	0.90[ASN][1000 genomes]
rs6662135	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6669449	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6696050	0.90[ASN][1000 genomes]
rs722260	0.90[ASN][1000 genomes]
rs72693816	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72693826	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74120755	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7521982	0.84[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7533908	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7535829	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7535979	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7539622	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs927844	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165505600-165513000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:165507200-165510400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:165507600-165512800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:165508400-165510800	Enhancers	Fetal Muscle Leg	muscle
5	chr1:165508400-165510800	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr1:165508600-165509800	Enhancers	Aorta	Aorta
7	chr1:165508600-165509800	Enhancers	Fetal Muscle Trunk	muscle
8	chr1:165508600-165510400	Enhancers	Placenta	Placenta
9	chr1:165508600-165510600	Enhancers	Left Ventricle	heart
10	chr1:165509000-165510000	Enhancers	HSMMtube	muscle
11	chr1:165509000-165510200	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr1:165509000-165510400	Enhancers	Adipose Nuclei	Adipose
13	chr1:165509000-165510400	Enhancers	Right Atrium	heart
14	chr1:165509000-165510600	Enhancers	Psoas Muscle	Psoas
15	chr1:165509400-165510400	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr1:165509400-165510400	Enhancers	Right Ventricle	heart
17	chr1:165509600-165509800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr1:165509600-165509800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr1:165509600-165509800	Enhancers	Fetal Lung	lung
20	chr1:165509600-165509800	Enhancers	Fetal Stomach	stomach
21	chr1:165509600-165510000	Flanking Active TSS	Fetal Heart	heart
22	chr1:165509600-165510600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr1:165509600-165510600	Enhancers	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links