Variant report

Variant	rs2553637
Chromosome Location	chr1:165480131-165480132
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1011469	0.92[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap]
rs1025159	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12117066	0.98[ASN][1000 genomes]
rs12126717	0.92[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs12137629	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs12143824	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs12143868	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1326374	0.83[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1425753	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16846491	0.84[YRI][hapmap]
rs16846547	0.80[ASN][1000 genomes]
rs16846623	0.92[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs16847331	0.83[CHB][hapmap];0.86[CHD][hapmap]
rs1913836	0.83[CHB][hapmap]
rs2152818	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs2478262	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2766083	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs285421	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs285422	1.00[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs285438	0.92[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap]
rs285462	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs285464	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs285467	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs285468	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs285473	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285474	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285478	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285479	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285499	0.90[ASN][1000 genomes]
rs285500	0.90[ASN][1000 genomes]
rs373494	0.94[MEX][hapmap]
rs401457	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4147146	0.82[CHB][hapmap]
rs56000052	0.90[ASN][1000 genomes]
rs6662135	1.00[ASN][1000 genomes]
rs6669449	0.92[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs72693816	0.81[ASN][1000 genomes]
rs72693826	0.81[ASN][1000 genomes]
rs7521982	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs7539622	0.92[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs927844	0.92[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs2553637	TADA1	cis	cerebellum	SCAN
rs2553637	NHLH1	cis	cerebellum	SCAN
rs2553637	DUSP12	cis	cerebellum	SCAN
rs2553637	KCNJ9	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165467600-165483200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:165479600-165481000	Enhancers	Fetal Heart	heart

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