Variant report

Variant	rs6669449
Chromosome Location	chr1:165502862-165502863
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165470975..165472618-chr1:165502217..165503817,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1011469	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1025159	0.85[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap]
rs1157861	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12117066	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12126717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12137629	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12143824	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12143868	0.80[ASN][1000 genomes]
rs1326374	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409413	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1425753	0.91[ASN][1000 genomes]
rs16846547	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16846623	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16846756	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16847073	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16847083	0.91[ASN][1000 genomes]
rs16847085	0.91[ASN][1000 genomes]
rs16847110	0.91[ASN][1000 genomes]
rs16847331	0.92[CHB][hapmap];0.93[CHD][hapmap];1.00[MEX][hapmap]
rs16847570	0.84[CHB][hapmap]
rs1913836	0.92[CHB][hapmap]
rs2152818	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2252342	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2478262	0.81[ASN][1000 genomes]
rs2553637	0.81[ASN][1000 genomes]
rs285421	0.91[ASN][1000 genomes]
rs285422	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs285435	0.97[ASN][1000 genomes]
rs285438	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs285462	0.83[ASN][1000 genomes]
rs285467	0.83[ASN][1000 genomes]
rs285468	0.83[ASN][1000 genomes]
rs285473	0.81[ASN][1000 genomes]
rs285474	0.81[ASN][1000 genomes]
rs285478	0.81[ASN][1000 genomes]
rs285479	0.81[ASN][1000 genomes]
rs34201742	0.88[ASN][1000 genomes]
rs401457	0.83[ASN][1000 genomes]
rs41267552	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41267554	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4147146	0.91[CHB][hapmap]
rs55890197	0.85[ASN][1000 genomes]
rs55957417	0.90[ASN][1000 genomes]
rs56201005	0.90[ASN][1000 genomes]
rs56277222	0.91[ASN][1000 genomes]
rs57799548	0.88[ASN][1000 genomes]
rs58058936	0.90[ASN][1000 genomes]
rs6662135	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6696050	0.90[ASN][1000 genomes]
rs722260	0.90[ASN][1000 genomes]
rs72693816	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72693826	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74120755	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7521982	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7533908	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7535829	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7535979	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7539622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7554080	0.84[CHB][hapmap]
rs927844	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165499400-165504200	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr1:165500000-165503000	Enhancers	Fetal Muscle Leg	muscle
3	chr1:165500400-165503600	Enhancers	Right Atrium	heart
4	chr1:165501600-165508600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr1:165502400-165503000	Enhancers	Psoas Muscle	Psoas
6	chr1:165502600-165508800	Weak transcription	Right Ventricle	heart
7	chr1:165502800-165508400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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