Variant report

Variant	rs1157861
Chromosome Location	chr1:165517429-165517430
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165513446..165516333-chr1:165517388..165519702,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1011469	0.82[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1025159	0.92[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];0.90[JPT][hapmap]
rs12117066	0.94[EUR][1000 genomes]
rs12126717	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12137629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12143824	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1326374	0.84[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1409413	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1425753	0.88[ASN][1000 genomes]
rs16846547	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16846623	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16846756	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16847073	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16847083	0.94[ASN][1000 genomes]
rs16847085	0.94[ASN][1000 genomes]
rs16847110	0.94[ASN][1000 genomes]
rs16847331	0.82[ASW][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap]
rs16847570	0.84[CHB][hapmap]
rs1913836	0.92[CHB][hapmap];0.81[TSI][hapmap]
rs2152818	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2252342	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs285421	0.88[ASN][1000 genomes]
rs285422	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs285435	1.00[ASN][1000 genomes]
rs285438	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs34201742	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs367199	0.80[CHD][hapmap]
rs41267552	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41267554	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4147146	0.91[CHB][hapmap]
rs55890197	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55957417	0.93[ASN][1000 genomes]
rs56201005	0.93[ASN][1000 genomes]
rs56277222	0.94[ASN][1000 genomes]
rs57799548	0.91[ASN][1000 genomes]
rs58058936	0.93[ASN][1000 genomes]
rs6662135	0.82[EUR][1000 genomes]
rs6669449	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6696050	0.93[ASN][1000 genomes]
rs722260	0.93[ASN][1000 genomes]
rs72693816	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72693826	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74120755	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7521982	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7533908	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7535829	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7535979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7539622	1.00[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7554080	0.84[CHB][hapmap]
rs927844	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1157861	MGST3	cis	lymphoblastoid	seeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165513800-165518400	Weak transcription	Psoas Muscle	Psoas
2	chr1:165513800-165519200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr1:165514200-165517600	Weak transcription	Left Ventricle	heart
4	chr1:165514200-165517800	Weak transcription	Fetal Heart	heart
5	chr1:165516000-165517600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr1:165516400-165518400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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