Variant report

Variant	rs16846623
Chromosome Location	chr1:165508863-165508864
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr1:165508580-165508931	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr1:165508571-165508931	MCF10A-Er-Src	breast:	n/a	n/a
3	CEBPB	chr1:165508598-165508903	HepG2	liver:	n/a	n/a
4	JUND	chr1:165508609-165508912	Hela-S3	cervix:	n/a	chr1:165508745-165508756
5	STAT3	chr1:165508621-165508915	MCF10A-Er-Src	breast:	n/a	n/a
6	FOSL2	chr1:165508552-165508988	A549	lung:	n/a	chr1:165508746-165508757
7	RFX5	chr1:165508644-165508873	Hela-S3	cervix:	n/a	n/a
8	FOXA1	chr1:165508591-165509006	HepG2	liver:	n/a	n/a
9	STAT3	chr1:165508686-165508877	MCF10A-Er-Src	breast:	n/a	n/a
10	CEBPB	chr1:165508591-165508932	Hela-S3	cervix:	n/a	n/a
11	NR2F2	chr1:165508495-165508906	MCF-7	breast:	n/a	n/a
12	FOXA1	chr1:165508533-165508886	HepG2	liver:	n/a	n/a
13	E2F4	chr1:165508660-165509026	MCF10A-Er-Src	breast:	n/a	n/a
14	JUN	chr1:165508689-165508889	HepG2	liver:	n/a	n/a
15	FOS	chr1:165508582-165508940	MCF10A-Er-Src	breast:	n/a	n/a
16	FOS	chr1:165508593-165508925	MCF10A-Er-Src	breast:	n/a	n/a
17	FOSL2	chr1:165508597-165508877	HepG2	liver:	n/a	chr1:165508746-165508757
18	ARID3A	chr1:165508617-165508909	HepG2	liver:	n/a	n/a
19	GATA3	chr1:165508474-165509047	MCF-7	breast:	n/a	n/a
20	FOSL2	chr1:165508470-165508977	MCF-7	breast:	n/a	chr1:165508746-165508757
21	JUND	chr1:165508579-165508863	HepG2	liver:	n/a	chr1:165508745-165508756

Variant related genes	Relation type
LRRC52	TF binding region
ENSG00000237463	TF binding region

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1011469	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1025159	0.85[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap]
rs1157861	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12117066	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12126717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12137629	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12143824	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12143868	0.80[ASN][1000 genomes]
rs1326374	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409413	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1425753	0.91[ASN][1000 genomes]
rs16846547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16846756	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16847073	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16847083	0.91[ASN][1000 genomes]
rs16847085	0.91[ASN][1000 genomes]
rs16847110	0.91[ASN][1000 genomes]
rs16847331	0.92[CHB][hapmap];0.93[CHD][hapmap];1.00[MEX][hapmap]
rs16847570	0.84[CHB][hapmap]
rs1913836	0.92[CHB][hapmap]
rs2152818	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2252342	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2478262	0.81[ASN][1000 genomes]
rs2553637	0.81[ASN][1000 genomes]
rs285421	0.91[ASN][1000 genomes]
rs285422	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs285435	0.97[ASN][1000 genomes]
rs285438	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs285462	0.83[ASN][1000 genomes]
rs285467	0.83[ASN][1000 genomes]
rs285468	0.83[ASN][1000 genomes]
rs285473	0.81[ASN][1000 genomes]
rs285474	0.81[ASN][1000 genomes]
rs285478	0.81[ASN][1000 genomes]
rs285479	0.81[ASN][1000 genomes]
rs34201742	0.88[ASN][1000 genomes]
rs401457	0.83[ASN][1000 genomes]
rs41267552	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41267554	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4147146	0.91[CHB][hapmap]
rs55890197	0.85[ASN][1000 genomes]
rs55957417	0.90[ASN][1000 genomes]
rs56201005	0.90[ASN][1000 genomes]
rs56277222	0.91[ASN][1000 genomes]
rs57799548	0.88[ASN][1000 genomes]
rs58058936	0.90[ASN][1000 genomes]
rs6662135	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6669449	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6696050	0.90[ASN][1000 genomes]
rs722260	0.90[ASN][1000 genomes]
rs72693816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72693826	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74120755	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7521982	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7533908	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7535829	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7535979	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7539622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7554080	0.84[CHB][hapmap]
rs927844	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165503600-165509000	Weak transcription	Psoas Muscle	Psoas
2	chr1:165503600-165509000	Weak transcription	Right Atrium	heart
3	chr1:165505600-165513000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:165507200-165510400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:165507600-165509600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr1:165507600-165512800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr1:165508400-165509000	Enhancers	A549	lung
8	chr1:165508400-165509400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:165508400-165510800	Enhancers	Fetal Muscle Leg	muscle
10	chr1:165508400-165510800	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr1:165508600-165509000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:165508600-165509800	Enhancers	Aorta	Aorta
13	chr1:165508600-165509800	Enhancers	Fetal Muscle Trunk	muscle
14	chr1:165508600-165510400	Enhancers	Placenta	Placenta
15	chr1:165508600-165510600	Enhancers	Left Ventricle	heart
16	chr1:165508800-165509000	Enhancers	Right Ventricle	heart
17	chr1:165508800-165509200	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr1:165508800-165509600	Enhancers	Fetal Heart	heart

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