Variant report

Variant	rs2478262
Chromosome Location	chr1:165484804-165484805
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1011469	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs1025159	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12117066	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12126717	0.92[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs12137629	0.92[CHB][hapmap];0.91[JPT][hapmap]
rs12143824	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs12143868	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1326374	0.84[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs1425753	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16846547	0.80[ASN][1000 genomes]
rs16846623	0.92[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs16847331	0.83[CHB][hapmap]
rs1913836	0.83[CHB][hapmap]
rs2152818	0.92[CHB][hapmap];0.91[JPT][hapmap]
rs2553637	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2766083	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs285421	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs285422	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs285438	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs285462	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs285464	0.81[EUR][1000 genomes]
rs285467	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs285468	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs285473	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285474	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285478	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285479	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285499	0.90[ASN][1000 genomes]
rs285500	0.90[ASN][1000 genomes]
rs401457	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4147146	0.82[CHB][hapmap]
rs56000052	0.90[ASN][1000 genomes]
rs6662135	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6669449	0.92[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs72693816	0.81[ASN][1000 genomes]
rs72693826	0.81[ASN][1000 genomes]
rs7521982	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs7539622	0.92[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs927844	0.92[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165482400-165487400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:165483800-165493400	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links