Variant report

Variant	rs285478
Chromosome Location	chr1:165483600-165483601
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165480828..165483670-chr1:165500006..165502209,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1011469	0.92[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap]
rs1025159	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12117066	0.98[ASN][1000 genomes]
rs12126717	0.92[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs12137629	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs12143824	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs12143868	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1326374	0.83[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1425753	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16846547	0.80[ASN][1000 genomes]
rs16846623	0.92[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs16847331	0.83[CHB][hapmap];0.83[CHD][hapmap]
rs1913836	0.83[CHB][hapmap]
rs2152818	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs2478262	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2553637	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2766083	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs285421	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs285422	1.00[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs285438	0.92[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap]
rs285462	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs285464	0.81[EUR][1000 genomes]
rs285467	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs285468	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs285473	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285474	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285479	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285499	0.90[ASN][1000 genomes]
rs285500	0.90[ASN][1000 genomes]
rs373494	0.94[MEX][hapmap]
rs401457	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4147146	0.82[CHB][hapmap]
rs56000052	0.90[ASN][1000 genomes]
rs6662135	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6669449	0.92[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs72693816	0.81[ASN][1000 genomes]
rs72693826	0.81[ASN][1000 genomes]
rs7521982	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs7539622	0.92[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs927844	0.92[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs285478	DUSP12	cis	cerebellum	SCAN
rs285478	KCNJ9	cis	parietal	SCAN
rs285478	NHLH1	cis	cerebellum	SCAN
rs285478	TADA1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165482400-165487400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:165483200-165483800	Enhancers	Fetal Heart	heart
3	chr1:165483400-165483600	Enhancers	Gastric	stomach

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