Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1025159	0.89[ASN][1000 genomes]
rs12117066	0.94[ASN][1000 genomes]
rs12143868	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1425753	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2478262	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2553637	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs285421	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs285422	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs285462	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs285464	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs285467	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs285468	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs285473	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs285474	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs285478	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs285479	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs285499	0.88[ASN][1000 genomes]
rs285500	0.88[ASN][1000 genomes]
rs401457	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56000052	0.88[ASN][1000 genomes]
rs6662135	0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2766083	LRRC52	cis	Esophagus Muscularis	GTEx

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165493200-165496600	Enhancers	HepG2	liver
2	chr1:165494800-165496400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr1:165495000-165496000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr1:165495000-165496400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr1:165495200-165496600	Weak transcription	Fetal Muscle Leg	muscle
6	chr1:165495400-165496000	Enhancers	Fetal Heart	heart
7	chr1:165495600-165496000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:165495800-165496000	Active TSS	K562	blood
9	chr1:165495800-165496200	Active TSS	Right Ventricle	heart

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