Variant report

Variant	rs1025159
Chromosome Location	chr1:165475283-165475284
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1011469	0.92[CHB][hapmap];0.87[CHD][hapmap];0.90[JPT][hapmap]
rs12117066	0.95[ASN][1000 genomes]
rs12126717	0.91[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap]
rs12137629	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs12143824	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs12143868	0.93[ASN][1000 genomes]
rs1326374	0.85[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap]
rs1425753	0.86[ASN][1000 genomes]
rs16846623	0.85[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap]
rs16847331	0.83[CHB][hapmap]
rs1913836	0.83[CHB][hapmap]
rs2152818	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs2478262	0.97[ASN][1000 genomes]
rs2553637	0.97[ASN][1000 genomes]
rs2766083	0.89[ASN][1000 genomes]
rs285421	0.86[ASN][1000 genomes]
rs285422	0.92[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs285438	0.92[CHB][hapmap];0.87[CHD][hapmap];0.90[JPT][hapmap]
rs285462	0.95[ASN][1000 genomes]
rs285467	0.95[ASN][1000 genomes]
rs285468	0.95[ASN][1000 genomes]
rs285473	0.97[ASN][1000 genomes]
rs285474	0.97[ASN][1000 genomes]
rs285478	0.97[ASN][1000 genomes]
rs285479	0.97[ASN][1000 genomes]
rs285499	0.92[ASN][1000 genomes]
rs285500	0.92[ASN][1000 genomes]
rs401457	0.95[ASN][1000 genomes]
rs4147146	0.82[CHB][hapmap]
rs56000052	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56410028	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6662135	0.97[ASN][1000 genomes]
rs6669449	0.85[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap]
rs7521982	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs7539622	0.85[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];0.90[JPT][hapmap]
rs927844	0.92[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1025159	DUSP12	cis	cerebellum	SCAN
rs1025159	UFC1	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165466800-165479600	Weak transcription	Fetal Heart	heart
2	chr1:165467600-165483200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:165472200-165476800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr1:165472200-165477400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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