Variant report

Variant	rs7521982
Chromosome Location	chr1:165519639-165519640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165512964..165515126-chr1:165517891..165521592,4	K562	blood:
2	chr1:165513446..165516333-chr1:165517388..165519702,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162763	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1011469	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1025159	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs1157861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12117066	0.94[EUR][1000 genomes]
rs12126717	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12137629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12143824	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1326374	0.84[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1409413	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1425753	0.88[ASN][1000 genomes]
rs16846547	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16846623	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16846756	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16847073	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16847083	0.94[ASN][1000 genomes]
rs16847085	0.94[ASN][1000 genomes]
rs16847110	0.94[ASN][1000 genomes]
rs16847331	0.90[CHB][hapmap]
rs16847570	0.82[CHB][hapmap]
rs1913836	0.90[CHB][hapmap]
rs2152818	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2252342	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs285421	0.88[ASN][1000 genomes]
rs285422	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs285435	1.00[ASN][1000 genomes]
rs285438	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs34201742	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41267552	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41267554	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4147146	0.80[CEU][hapmap];0.90[CHB][hapmap]
rs55890197	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55957417	0.93[ASN][1000 genomes]
rs56201005	0.93[ASN][1000 genomes]
rs56277222	0.94[ASN][1000 genomes]
rs57799548	0.91[ASN][1000 genomes]
rs58058936	0.93[ASN][1000 genomes]
rs6662135	0.82[EUR][1000 genomes]
rs6669449	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6696050	0.93[ASN][1000 genomes]
rs722260	0.93[ASN][1000 genomes]
rs72693816	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72693826	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74120755	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7533908	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7535829	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7535979	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7539622	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7554080	0.82[CHB][hapmap]
rs927844	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165519400-165520200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links