Variant report

Variant	rs55957417
Chromosome Location	chr1:165544992-165544993
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1011469	1.00[ASN][1000 genomes]
rs1157861	0.93[ASN][1000 genomes]
rs12126717	0.90[ASN][1000 genomes]
rs12137629	0.93[ASN][1000 genomes]
rs12143824	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326374	0.90[ASN][1000 genomes]
rs1409413	0.98[ASN][1000 genomes]
rs1425753	0.81[ASN][1000 genomes]
rs16846547	0.88[ASN][1000 genomes]
rs16846623	0.90[ASN][1000 genomes]
rs16846756	0.93[ASN][1000 genomes]
rs16847073	0.98[ASN][1000 genomes]
rs16847083	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16847085	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16847110	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16847312	0.81[AFR][1000 genomes]
rs2152818	1.00[ASN][1000 genomes]
rs2252342	0.98[ASN][1000 genomes]
rs285421	0.81[ASN][1000 genomes]
rs285422	0.81[ASN][1000 genomes]
rs285435	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs285438	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34201742	0.98[ASN][1000 genomes]
rs41267552	1.00[ASN][1000 genomes]
rs41267554	1.00[ASN][1000 genomes]
rs55890197	0.95[ASN][1000 genomes]
rs56201005	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56277222	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57799548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58058936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6657863	0.95[EUR][1000 genomes]
rs6669449	0.90[ASN][1000 genomes]
rs6696050	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs722260	0.97[ASN][1000 genomes]
rs72693816	0.90[ASN][1000 genomes]
rs72693826	0.90[ASN][1000 genomes]
rs74120755	0.93[ASN][1000 genomes]
rs7521982	0.93[ASN][1000 genomes]
rs7533908	0.93[ASN][1000 genomes]
rs7535829	0.93[ASN][1000 genomes]
rs7535979	0.93[ASN][1000 genomes]
rs7539622	0.90[ASN][1000 genomes]
rs927844	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429902	chr1:165531342-165574342	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165542600-165547000	Weak transcription	Psoas Muscle	Psoas
2	chr1:165544000-165545200	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr1:165544800-165545200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:165544800-165545200	Enhancers	Fetal Lung	lung
5	chr1:165544800-165545200	Enhancers	Ovary	ovary
6	chr1:165544800-165545200	Enhancers	Right Atrium	heart
7	chr1:165544800-165545200	Enhancers	Right Ventricle	heart
8	chr1:165544800-165545400	Enhancers	Fetal Heart	heart

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