Variant report
| Variant | rs16847312 |
|---|---|
| Chromosome Location | chr1:165556222-165556223 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:165548827..165550594-chr1:165555598..165558121,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10494445 | 1.00[CEU][hapmap] |
| rs12143824 | 0.83[AFR][1000 genomes] |
| rs1326375 | 1.00[CEU][hapmap] |
| rs1648111 | 1.00[CEU][hapmap] |
| rs166949 | 1.00[CEU][hapmap] |
| rs16846405 | 1.00[CEU][hapmap] |
| rs16846612 | 1.00[CEU][hapmap];0.87[TSI][hapmap] |
| rs16846621 | 1.00[CEU][hapmap] |
| rs184038 | 1.00[CEU][hapmap] |
| rs192586 | 1.00[CEU][hapmap] |
| rs192587 | 1.00[CEU][hapmap] |
| rs2433131 | 1.00[CEU][hapmap] |
| rs2459240 | 1.00[CEU][hapmap] |
| rs2485400 | 1.00[CEU][hapmap] |
| rs2485401 | 1.00[CEU][hapmap] |
| rs285423 | 1.00[CEU][hapmap] |
| rs285433 | 1.00[CEU][hapmap] |
| rs285434 | 1.00[CEU][hapmap] |
| rs285444 | 1.00[CEU][hapmap] |
| rs285446 | 1.00[CEU][hapmap] |
| rs285447 | 1.00[CEU][hapmap] |
| rs285449 | 1.00[CEU][hapmap] |
| rs285450 | 1.00[CEU][hapmap] |
| rs285451 | 1.00[CEU][hapmap] |
| rs285454 | 1.00[CEU][hapmap] |
| rs55957417 | 0.81[AFR][1000 genomes] |
| rs58058936 | 0.81[AFR][1000 genomes] |
| rs6666562 | 1.00[CEU][hapmap] |
| rs74118810 | 1.00[EUR][1000 genomes] |
| rs74118819 | 1.00[EUR][1000 genomes] |
| rs74118822 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs796570 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv429902 | chr1:165531342-165574342 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:165547400-165566800 | Weak transcription | Psoas Muscle | Psoas |
| 2 | chr1:165554400-165556400 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
