Variant report

Variant	rs285423
Chromosome Location	chr1:165502375-165502376
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165470975..165472618-chr1:165502217..165503817,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10494443	0.85[EUR][1000 genomes]
rs10494445	1.00[CEU][hapmap]
rs1326375	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[EUR][1000 genomes]
rs1648111	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs166949	1.00[CEU][hapmap];0.90[GIH][hapmap];0.90[TSI][hapmap];1.00[EUR][1000 genomes]
rs16846405	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs16846410	0.85[EUR][1000 genomes]
rs16846549	0.85[EUR][1000 genomes]
rs16846612	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs16846621	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs16847312	1.00[CEU][hapmap]
rs184038	1.00[CEU][hapmap];0.90[GIH][hapmap];0.90[TSI][hapmap];0.95[EUR][1000 genomes]
rs184039	1.00[EUR][1000 genomes]
rs191746	0.95[EUR][1000 genomes]
rs192586	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs192587	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2254880	1.00[EUR][1000 genomes]
rs2433131	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2433132	0.91[EUR][1000 genomes]
rs2459240	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2485399	1.00[EUR][1000 genomes]
rs2485400	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2485401	1.00[CEU][hapmap];0.90[GIH][hapmap];0.90[TSI][hapmap];0.95[EUR][1000 genomes]
rs2485408	1.00[EUR][1000 genomes]
rs285424	1.00[EUR][1000 genomes]
rs285433	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs285434	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs285436	0.95[EUR][1000 genomes]
rs285437	0.95[EUR][1000 genomes]
rs285440	0.95[EUR][1000 genomes]
rs285441	0.95[EUR][1000 genomes]
rs285442	0.95[EUR][1000 genomes]
rs285443	0.86[EUR][1000 genomes]
rs285444	1.00[CEU][hapmap]
rs285445	0.95[EUR][1000 genomes]
rs285446	1.00[CEU][hapmap];0.90[GIH][hapmap];0.90[TSI][hapmap]
rs285447	1.00[CEU][hapmap];0.90[GIH][hapmap];0.90[TSI][hapmap];1.00[EUR][1000 genomes]
rs285449	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs285450	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs285451	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs285452	0.95[EUR][1000 genomes]
rs285453	0.95[EUR][1000 genomes]
rs285454	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs366124	1.00[EUR][1000 genomes]
rs369231	1.00[EUR][1000 genomes]
rs375780	1.00[EUR][1000 genomes]
rs385649	1.00[EUR][1000 genomes]
rs386186	1.00[EUR][1000 genomes]
rs390395	1.00[EUR][1000 genomes]
rs404612	1.00[EUR][1000 genomes]
rs415710	1.00[EUR][1000 genomes]
rs421361	1.00[EUR][1000 genomes]
rs424313	1.00[EUR][1000 genomes]
rs58628453	0.85[EUR][1000 genomes]
rs6426916	1.00[EUR][1000 genomes]
rs6659141	1.00[EUR][1000 genomes]
rs6666562	1.00[CEU][hapmap]
rs74120723	0.85[EUR][1000 genomes]
rs74120729	0.85[EUR][1000 genomes]
rs796570	1.00[CEU][hapmap];0.95[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165499400-165502800	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr1:165499400-165504200	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr1:165500000-165503000	Enhancers	Fetal Muscle Leg	muscle
4	chr1:165500400-165503600	Enhancers	Right Atrium	heart
5	chr1:165500800-165502600	Weak transcription	Adipose Nuclei	Adipose
6	chr1:165501600-165502400	Weak transcription	Psoas Muscle	Psoas
7	chr1:165501600-165508600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr1:165502000-165502600	Enhancers	Right Ventricle	heart
9	chr1:165502000-165502800	Enhancers	Left Ventricle	heart

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