Variant report

Variant	rs285452
Chromosome Location	chr1:165510771-165510772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165506382..165508384-chr1:165509040..165511193,2	K562	blood:
2	chr1:165506171..165507882-chr1:165509693..165511410,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10494443	0.81[EUR][1000 genomes]
rs1326375	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1648111	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs166949	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16846405	0.81[EUR][1000 genomes]
rs16846410	0.81[EUR][1000 genomes]
rs16846549	0.81[EUR][1000 genomes]
rs16846612	0.81[EUR][1000 genomes]
rs16846621	0.81[EUR][1000 genomes]
rs184038	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs184039	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs191746	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs192586	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs192587	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2254880	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2433131	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2433132	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2459240	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2485399	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2485400	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2485401	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2485408	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs285423	0.95[EUR][1000 genomes]
rs285424	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs285433	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs285434	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs285436	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs285437	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs285440	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs285441	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs285442	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs285443	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs285445	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs285447	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs285449	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs285450	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs285451	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs285453	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs285454	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs366124	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs369231	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs375780	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs385649	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs386186	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs390395	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs404612	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs415710	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs421361	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs424313	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58628453	0.81[EUR][1000 genomes]
rs6426916	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6659141	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs74120723	0.81[EUR][1000 genomes]
rs74120729	0.81[EUR][1000 genomes]
rs796570	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165505600-165513000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:165507600-165512800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr1:165508400-165510800	Enhancers	Fetal Muscle Leg	muscle
4	chr1:165508400-165510800	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr1:165509800-165511400	Weak transcription	Fetal Lung	lung
6	chr1:165509800-165511800	Weak transcription	Fetal Stomach	stomach
7	chr1:165510000-165510800	Enhancers	Fetal Heart	heart
8	chr1:165510200-165511000	Enhancers	Fetal Muscle Trunk	muscle
9	chr1:165510200-165513000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr1:165510400-165512400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:165510400-165512800	Weak transcription	Adipose Nuclei	Adipose
12	chr1:165510400-165512800	Weak transcription	Placenta	Placenta
13	chr1:165510400-165512800	Weak transcription	Right Atrium	heart
14	chr1:165510400-165512800	Weak transcription	Right Ventricle	heart
15	chr1:165510400-165513000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr1:165510600-165512000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr1:165510600-165512800	Weak transcription	Left Ventricle	heart
18	chr1:165510600-165512800	Weak transcription	Psoas Muscle	Psoas
19	chr1:165510600-165513000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links