Variant report

Variant	rs285454
Chromosome Location	chr1:165509945-165509946
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165506382..165508384-chr1:165509040..165511193,2	K562	blood:
2	chr1:165506171..165507882-chr1:165509693..165511410,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10494443	0.85[EUR][1000 genomes]
rs10494445	1.00[CEU][hapmap]
rs1326375	1.00[CEU][hapmap];0.90[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1648111	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs166949	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16846405	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs16846410	0.85[EUR][1000 genomes]
rs16846549	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16846612	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16846621	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16847312	1.00[CEU][hapmap]
rs184038	1.00[CEU][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs184039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs191746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs192586	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs192587	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2254880	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2433131	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2433132	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2459240	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2485399	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2485400	1.00[CEU][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2485401	1.00[CEU][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2485408	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs285423	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs285424	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs285433	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs285434	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs285436	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs285437	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs285440	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs285441	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs285442	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs285443	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs285444	1.00[CEU][hapmap]
rs285445	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs285446	1.00[CEU][hapmap];0.86[YRI][hapmap]
rs285447	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs285449	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs285450	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs285451	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs285452	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs285453	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs366124	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs369231	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs375780	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs385649	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs386186	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs390395	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs404612	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs415710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs421361	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs424313	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58628453	0.85[EUR][1000 genomes]
rs6426916	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6659141	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6666562	1.00[CEU][hapmap]
rs71485870	0.91[AFR][1000 genomes]
rs74118810	0.81[AMR][1000 genomes]
rs74120723	0.85[EUR][1000 genomes]
rs74120729	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs796570	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165505600-165513000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:165507200-165510400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:165507600-165512800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:165508400-165510800	Enhancers	Fetal Muscle Leg	muscle
5	chr1:165508400-165510800	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr1:165508600-165510400	Enhancers	Placenta	Placenta
7	chr1:165508600-165510600	Enhancers	Left Ventricle	heart
8	chr1:165509000-165510000	Enhancers	HSMMtube	muscle
9	chr1:165509000-165510200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr1:165509000-165510400	Enhancers	Adipose Nuclei	Adipose
11	chr1:165509000-165510400	Enhancers	Right Atrium	heart
12	chr1:165509000-165510600	Enhancers	Psoas Muscle	Psoas
13	chr1:165509400-165510400	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr1:165509400-165510400	Enhancers	Right Ventricle	heart
15	chr1:165509600-165510000	Flanking Active TSS	Fetal Heart	heart
16	chr1:165509600-165510600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr1:165509600-165510600	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr1:165509800-165510200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr1:165509800-165511400	Weak transcription	Fetal Lung	lung
20	chr1:165509800-165511800	Weak transcription	Fetal Stomach	stomach

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