Variant report

Variant	rs58628453
Chromosome Location	chr1:165498651-165498652
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10158373	0.82[EUR][1000 genomes]
rs10494443	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10494444	0.88[EUR][1000 genomes]
rs10494445	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1326375	0.85[EUR][1000 genomes]
rs1648111	0.85[EUR][1000 genomes]
rs166949	0.85[EUR][1000 genomes]
rs16846405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16846410	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16846549	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16846612	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16846621	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs184039	0.85[EUR][1000 genomes]
rs192587	0.85[EUR][1000 genomes]
rs2254880	0.85[EUR][1000 genomes]
rs2433131	0.85[EUR][1000 genomes]
rs2459240	0.85[EUR][1000 genomes]
rs2485399	0.85[EUR][1000 genomes]
rs2485400	0.85[EUR][1000 genomes]
rs2485408	0.85[EUR][1000 genomes]
rs285423	0.85[EUR][1000 genomes]
rs285424	0.85[EUR][1000 genomes]
rs285447	0.85[EUR][1000 genomes]
rs285449	0.85[EUR][1000 genomes]
rs285450	0.85[EUR][1000 genomes]
rs285451	0.85[EUR][1000 genomes]
rs285452	0.81[EUR][1000 genomes]
rs285453	0.81[EUR][1000 genomes]
rs285454	0.85[EUR][1000 genomes]
rs366124	0.85[EUR][1000 genomes]
rs369231	0.85[EUR][1000 genomes]
rs375780	0.85[EUR][1000 genomes]
rs385649	0.85[EUR][1000 genomes]
rs386186	0.85[EUR][1000 genomes]
rs390395	0.85[EUR][1000 genomes]
rs404612	0.85[EUR][1000 genomes]
rs415710	0.85[EUR][1000 genomes]
rs421361	0.85[EUR][1000 genomes]
rs424313	0.85[EUR][1000 genomes]
rs6426916	0.85[EUR][1000 genomes]
rs6659141	0.85[EUR][1000 genomes]
rs6666562	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs74120723	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74120729	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3434870	chr1:165497978-165500276	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3436695	chr1:165498478-165499776	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165497000-165501400	Weak transcription	Left Ventricle	heart
2	chr1:165497200-165499400	Weak transcription	Fetal Muscle Leg	muscle
3	chr1:165497200-165499400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr1:165497200-165501400	Weak transcription	Right Ventricle	heart
5	chr1:165498600-165498800	Enhancers	Fetal Heart	heart

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