Variant report

Variant	rs10494445
Chromosome Location	chr1:165555806-165555807
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165548827..165550594-chr1:165555598..165558121,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10158373	0.87[EUR][1000 genomes]
rs10494443	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10494444	0.94[EUR][1000 genomes]
rs1326375	1.00[CEU][hapmap]
rs1648111	1.00[CEU][hapmap]
rs166949	1.00[CEU][hapmap]
rs16846405	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16846410	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16846549	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16846612	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16846621	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16847312	1.00[CEU][hapmap]
rs184038	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs191746	0.84[EUR][1000 genomes]
rs192586	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs192587	1.00[CEU][hapmap]
rs2433131	1.00[CEU][hapmap]
rs2459240	1.00[CEU][hapmap]
rs2485400	1.00[CEU][hapmap]
rs2485401	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs285423	1.00[CEU][hapmap]
rs285433	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs285434	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs285436	0.84[EUR][1000 genomes]
rs285437	0.84[EUR][1000 genomes]
rs285440	0.84[EUR][1000 genomes]
rs285441	0.84[EUR][1000 genomes]
rs285442	0.84[EUR][1000 genomes]
rs285444	1.00[CEU][hapmap]
rs285445	0.84[EUR][1000 genomes]
rs285446	1.00[CEU][hapmap]
rs285447	1.00[CEU][hapmap]
rs285449	1.00[CEU][hapmap]
rs285450	1.00[CEU][hapmap]
rs285451	1.00[CEU][hapmap]
rs285454	1.00[CEU][hapmap]
rs58628453	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6666562	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs74120723	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs74120729	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs796570	1.00[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429902	chr1:165531342-165574342	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165547400-165566800	Weak transcription	Psoas Muscle	Psoas
2	chr1:165554400-165556400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr1:165554600-165556000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:165555000-165556000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:165555200-165556000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr1:165555600-165556000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr1:165555800-165556000	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood

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