Variant report

Variant	rs2252342
Chromosome Location	chr1:165533230-165533231
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165523032..165525688-chr1:165531841..165534696,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1011469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1025159	0.92[CHB][hapmap];0.87[CHD][hapmap];0.90[JPT][hapmap]
rs1157861	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12117066	0.84[EUR][1000 genomes]
rs12126717	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12137629	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12143824	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1326374	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1409413	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1425753	0.83[ASN][1000 genomes]
rs16846547	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16846623	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16846756	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16847073	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16847083	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16847085	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16847110	1.00[ASN][1000 genomes]
rs16847331	0.92[CHB][hapmap];0.93[CHD][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap]
rs16847570	0.84[CHB][hapmap]
rs1913836	0.92[CHB][hapmap];0.81[TSI][hapmap]
rs2152818	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs285421	0.83[ASN][1000 genomes]
rs285422	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs285435	0.94[ASN][1000 genomes]
rs285438	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs34201742	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41267552	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41267554	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4147146	0.91[CHB][hapmap];0.82[AMR][1000 genomes]
rs55890197	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55957417	0.98[ASN][1000 genomes]
rs56201005	0.98[ASN][1000 genomes]
rs56277222	1.00[ASN][1000 genomes]
rs57799548	0.97[ASN][1000 genomes]
rs58058936	0.98[ASN][1000 genomes]
rs6657863	0.83[CEU][hapmap]
rs6669449	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6696050	0.98[ASN][1000 genomes]
rs722260	0.99[ASN][1000 genomes]
rs72693816	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72693826	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74120755	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7521982	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7533908	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7535829	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7535979	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7539622	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7549428	0.81[AFR][1000 genomes]
rs7554080	0.84[CHB][hapmap];0.82[GIH][hapmap]
rs927844	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429902	chr1:165531342-165574342	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165530800-165533600	Weak transcription	Left Ventricle	heart
2	chr1:165530800-165533800	Weak transcription	Right Atrium	heart
3	chr1:165531000-165534200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:165531200-165534000	Weak transcription	Right Ventricle	heart
5	chr1:165531400-165533800	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links