Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165571067..165573975-chr1:165796356..165799050,2	K562	blood:
2	chr1:165572183..165574068-chr1:165736733..165739045,2	K562	blood:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1011469	0.84[CHB][hapmap]
rs12125420	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12126717	0.84[CHB][hapmap]
rs12128974	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12130157	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12133779	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12137629	0.84[CHB][hapmap]
rs12142477	0.94[ASN][1000 genomes]
rs12143824	0.84[CHB][hapmap]
rs16846623	0.84[CHB][hapmap]
rs16847331	0.92[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap]
rs1913836	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.92[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.94[ASN][1000 genomes]
rs2152818	0.84[CHB][hapmap]
rs285422	0.84[CHB][hapmap]
rs285438	0.84[CHB][hapmap]
rs4147146	0.92[CHB][hapmap]
rs4147598	0.81[GIH][hapmap];0.82[MEX][hapmap]
rs6669449	0.84[CHB][hapmap]
rs7521982	0.82[CHB][hapmap]
rs7539622	0.84[CHB][hapmap]
rs7554080	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs927844	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429902	chr1:165531342-165574342	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16847570	KLHDC9	cis	cerebellum	SCAN
rs16847570	MPZL1	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165568000-165574800	Weak transcription	Right Atrium	heart
2	chr1:165568200-165579600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:165573000-165573600	Enhancers	HepG2	liver
4	chr1:165573000-165573800	Enhancers	Liver	Liver

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