Variant report

Variant	rs12130157
Chromosome Location	chr1:165585800-165585801
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12119602	0.85[EUR][1000 genomes]
rs12125420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12128974	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12131992	0.85[EUR][1000 genomes]
rs12133779	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12142477	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16847331	0.81[EUR][1000 genomes]
rs16847398	0.85[EUR][1000 genomes]
rs16847570	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1913836	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4147146	0.88[EUR][1000 genomes]
rs4147598	0.82[AMR][1000 genomes]
rs7554080	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165584800-165586400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr1:165585200-165586200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr1:165585400-165585800	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr1:165585400-165586400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr1:165585400-165586400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr1:165585400-165586400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:165585400-165586400	Enhancers	Stomach Mucosa	stomach
8	chr1:165585400-165586600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr1:165585400-165586800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:165585400-165586800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:165585600-165586200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr1:165585600-165586600	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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