Variant report

Variant	rs16849238
Chromosome Location	chr1:165636299-165636300
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr1:165636120-165636310	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165630276..165631967-chr1:165634765..165636689,2	K562	blood:
2	chr1:165635068..165636574-chr1:165738218..165739859,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000206990	TF binding region
ENSG00000230175	TF binding region
ALDH9A1	TF binding region
ENSG00000206990	Chromatin interaction
ENSG00000143183	Chromatin interaction

rs_ID	r²[population]
rs16848958	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16849230	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs2348731	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56946978	1.00[EUR][1000 genomes]
rs57266835	1.00[EUR][1000 genomes]
rs58365780	1.00[EUR][1000 genomes]
rs60095346	1.00[EUR][1000 genomes]
rs60308920	1.00[EUR][1000 genomes]
rs61125729	1.00[EUR][1000 genomes]
rs6658134	1.00[EUR][1000 genomes]
rs73014618	1.00[EUR][1000 genomes]
rs73014649	1.00[EUR][1000 genomes]
rs73027023	1.00[EUR][1000 genomes]
rs73027060	1.00[EUR][1000 genomes]
rs73028710	1.00[EUR][1000 genomes]
rs73029460	1.00[EUR][1000 genomes]
rs73029465	1.00[EUR][1000 genomes]
rs73029467	1.00[EUR][1000 genomes]
rs7528944	1.00[EUR][1000 genomes]
rs9333396	1.00[EUR][1000 genomes]

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165606200-165659600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:165618000-165638600	Strong transcription	Cortex derived primary cultured neurospheres	brain
3	chr1:165618200-165652400	Strong transcription	Fetal Muscle Leg	muscle
4	chr1:165618800-165638600	Strong transcription	Fetal Intestine Large	intestine
5	chr1:165619000-165642600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr1:165619000-165643600	Strong transcription	Fetal Muscle Trunk	muscle
7	chr1:165619200-165648800	Strong transcription	Liver	Liver
8	chr1:165619600-165642600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:165619600-165653200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr1:165623400-165653000	Weak transcription	Stomach Mucosa	stomach
11	chr1:165623800-165636400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr1:165627200-165637400	Weak transcription	Right Ventricle	heart
13	chr1:165627600-165636600	Weak transcription	Psoas Muscle	Psoas
14	chr1:165628000-165646600	Strong transcription	Primary T cells from cord blood	blood
15	chr1:165628800-165639000	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr1:165628800-165639000	Strong transcription	Rectal Mucosa Donor 31	rectum
17	chr1:165628800-165640200	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr1:165628800-165642000	Strong transcription	HSMM	muscle
19	chr1:165628800-165642200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr1:165628800-165644000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr1:165628800-165646800	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr1:165628800-165646800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr1:165629000-165638600	Strong transcription	Brain Substantia Nigra	brain
24	chr1:165629000-165639400	Strong transcription	Placenta	Placenta
25	chr1:165629000-165653600	Strong transcription	Dnd41	blood
26	chr1:165629200-165638600	Strong transcription	Sigmoid Colon	Sigmoid Colon
27	chr1:165629200-165638800	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr1:165629200-165641600	Strong transcription	Duodenum Mucosa	Duodenum
29	chr1:165629200-165642800	Strong transcription	Primary hematopoietic stem cells	blood
30	chr1:165629200-165643600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr1:165629400-165642200	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr1:165629400-165642600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr1:165629400-165652800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr1:165629400-165654200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr1:165629400-165656000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr1:165629600-165638200	Strong transcription	Esophagus	oesophagus
37	chr1:165629600-165638600	Strong transcription	Fetal Brain Female	brain
38	chr1:165629600-165641800	Strong transcription	Fetal Lung	lung
39	chr1:165629600-165643000	Strong transcription	Primary B cells from cord blood	blood
40	chr1:165629600-165654800	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr1:165629800-165638600	Strong transcription	Brain Anterior Caudate	brain
42	chr1:165629800-165638800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr1:165629800-165642000	Strong transcription	Primary T helper cells PMA-I stimulated	--
44	chr1:165629800-165643600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr1:165629800-165654800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr1:165630000-165638600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr1:165630000-165638600	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr1:165630000-165639000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr1:165630000-165642200	Strong transcription	Fetal Thymus	thymus
50	chr1:165630000-165642200	Strong transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links