Variant report

Variant	rs73027030
Chromosome Location	chr1:165565316-165565317
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1337446	0.81[ASN][1000 genomes]
rs60308920	0.81[AFR][1000 genomes]
rs72696036	0.93[ASN][1000 genomes]
rs73027023	0.97[AFR][1000 genomes]
rs73027048	0.81[ASN][1000 genomes]
rs952375	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429902	chr1:165531342-165574342	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165547400-165566800	Weak transcription	Psoas Muscle	Psoas
2	chr1:165562800-165566600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr1:165564400-165565400	Enhancers	NHDF-Ad	bronchial
4	chr1:165564600-165566600	Weak transcription	Fetal Muscle Leg	muscle
5	chr1:165564800-165565400	Enhancers	HSMM	muscle
6	chr1:165565000-165566600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:165565200-165565400	Enhancers	NHLF	lung
8	chr1:165565200-165566800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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