Variant report

Variant	rs57877883
Chromosome Location	chr9:108060622-108060623
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:108006089..108008759-chr9:108057985..108062385,6	MCF-7	breast:
2	chr9:108058873..108061058-chr9:108078895..108081704,2	MCF-7	breast:
3	chr9:108059299..108061602-chr9:108067206..108069690,2	K562	blood:

Variant related genes	Relation type
ENSG00000070214	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12341869	1.00[AMR][1000 genomes]
rs28688962	1.00[AMR][1000 genomes]
rs59290851	1.00[AMR][1000 genomes]
rs6479301	0.83[AMR][1000 genomes]
rs6479302	0.83[AMR][1000 genomes]
rs6479303	0.83[AMR][1000 genomes]
rs6479304	1.00[AMR][1000 genomes]
rs7024012	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7026389	1.00[AMR][1000 genomes]
rs7033929	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7039638	1.00[AMR][1000 genomes]
rs7046185	1.00[AMR][1000 genomes]
rs7048497	1.00[AMR][1000 genomes]
rs72744219	0.83[AMR][1000 genomes]
rs72744225	0.83[AMR][1000 genomes]
rs73510211	1.00[AMR][1000 genomes]
rs73510218	1.00[AMR][1000 genomes]
rs73510246	1.00[AMR][1000 genomes]
rs73510280	1.00[AMR][1000 genomes]
rs73510281	1.00[AMR][1000 genomes]
rs73510289	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73510295	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73666622	1.00[AMR][1000 genomes]
rs73666624	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73666625	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7847744	0.83[AMR][1000 genomes]
rs7853038	1.00[AMR][1000 genomes]
rs7853709	0.83[AMR][1000 genomes]
rs7854064	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7854282	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7857088	0.83[AMR][1000 genomes]
rs7860356	0.83[AMR][1000 genomes]
rs7869261	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7873924	0.83[AMR][1000 genomes]
rs7874307	1.00[AMR][1000 genomes]
rs9777083	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv831678	chr9:107923522-108112813	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv893685	chr9:107940737-108083485	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv893686	chr9:107968330-108083485	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv893687	chr9:107973277-108083485	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv893688	chr9:107974761-108083485	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv893689	chr9:107978563-108130606	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv893690	chr9:107992706-108083485	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108049400-108074200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr9:108050200-108061400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr9:108050200-108061800	Weak transcription	Fetal Stomach	stomach
4	chr9:108051000-108061600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr9:108052400-108061400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:108052800-108061400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:108053000-108063000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:108053400-108061400	Weak transcription	Aorta	Aorta
9	chr9:108053600-108061600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr9:108053800-108061400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr9:108054000-108065400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr9:108054000-108070000	Weak transcription	Gastric	stomach
13	chr9:108054200-108061800	Weak transcription	Pancreas	Pancrea
14	chr9:108054400-108061400	Weak transcription	Right Ventricle	heart
15	chr9:108054600-108061800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr9:108054600-108090800	Weak transcription	Psoas Muscle	Psoas
17	chr9:108054800-108061800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr9:108055000-108061600	Weak transcription	Colon Smooth Muscle	Colon
19	chr9:108055000-108061600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr9:108055200-108061400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr9:108055200-108065000	Weak transcription	Primary B cells from cord blood	blood
22	chr9:108055400-108061000	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr9:108055600-108151200	Weak transcription	Esophagus	oesophagus
24	chr9:108056000-108061400	Weak transcription	Fetal Thymus	thymus
25	chr9:108056000-108061800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr9:108056000-108061800	Weak transcription	Brain Germinal Matrix	brain
27	chr9:108056400-108061600	Weak transcription	Fetal Brain Female	brain
28	chr9:108056600-108061200	Enhancers	Hela-S3	cervix
29	chr9:108056600-108062200	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr9:108056800-108077800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr9:108057000-108061800	Weak transcription	Thymus	Thymus
32	chr9:108057000-108062000	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr9:108057000-108064200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr9:108057000-108066800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr9:108057200-108061200	Enhancers	Osteobl	bone
36	chr9:108057200-108061400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr9:108057400-108061800	Enhancers	Brain Substantia Nigra	brain
38	chr9:108057400-108082600	Weak transcription	Dnd41	blood
39	chr9:108057600-108061200	Weak transcription	Primary T cells from cord blood	blood
40	chr9:108058200-108062600	Enhancers	NHDF-Ad	bronchial
41	chr9:108058200-108063000	Enhancers	Stomach Mucosa	stomach
42	chr9:108058400-108061200	Enhancers	HUVEC	blood vessel
43	chr9:108058600-108061000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr9:108058600-108061200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr9:108058600-108061200	Weak transcription	Small Intestine	intestine
46	chr9:108058600-108061400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr9:108058600-108061400	Weak transcription	Fetal Muscle Leg	muscle
48	chr9:108058600-108061600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr9:108058600-108061600	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr9:108058600-108061800	Enhancers	Brain Inferior Temporal Lobe	brain

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