Variant report

Variant	rs7853709
Chromosome Location	chr9:108071749-108071750
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:108052363..108054677-chr9:108071523..108074219,3	MCF-7	breast:
2	chr9:108071266..108075480-chr9:108075885..108078483,4	K562	blood:
3	chr9:108006377..108008675-chr9:108070709..108073435,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000070214	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12341869	0.83[AMR][1000 genomes]
rs28688962	0.83[AMR][1000 genomes]
rs57877883	0.83[AMR][1000 genomes]
rs59290851	0.83[AMR][1000 genomes]
rs6479304	0.83[AMR][1000 genomes]
rs7024012	0.83[AMR][1000 genomes]
rs7026389	0.83[AMR][1000 genomes]
rs7033929	0.83[AMR][1000 genomes]
rs7039638	0.83[AMR][1000 genomes]
rs7046185	0.83[AMR][1000 genomes]
rs7048497	0.83[AMR][1000 genomes]
rs73510211	0.83[AMR][1000 genomes]
rs73510218	0.83[AMR][1000 genomes]
rs73510246	0.83[AMR][1000 genomes]
rs73510280	0.83[AMR][1000 genomes]
rs73510281	0.83[AMR][1000 genomes]
rs73510289	0.83[AMR][1000 genomes]
rs73510295	0.83[AMR][1000 genomes]
rs73666622	0.83[AMR][1000 genomes]
rs73666624	0.83[AMR][1000 genomes]
rs73666625	0.83[AMR][1000 genomes]
rs7853038	0.83[AMR][1000 genomes]
rs7854064	0.83[AMR][1000 genomes]
rs7854282	0.83[AMR][1000 genomes]
rs7869261	0.83[AMR][1000 genomes]
rs7874307	0.83[AMR][1000 genomes]
rs9775852	0.87[AFR][1000 genomes]
rs9777083	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv831678	chr9:107923522-108112813	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv893685	chr9:107940737-108083485	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv893686	chr9:107968330-108083485	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv893687	chr9:107973277-108083485	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv893688	chr9:107974761-108083485	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv893689	chr9:107978563-108130606	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv893690	chr9:107992706-108083485	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108049400-108074200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr9:108054600-108090800	Weak transcription	Psoas Muscle	Psoas
3	chr9:108055600-108151200	Weak transcription	Esophagus	oesophagus
4	chr9:108056800-108077800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr9:108057400-108082600	Weak transcription	Dnd41	blood
6	chr9:108059400-108081200	Weak transcription	Fetal Kidney	kidney
7	chr9:108060000-108075000	Weak transcription	Ovary	ovary
8	chr9:108060200-108077000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr9:108062200-108071800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr9:108062200-108071800	Weak transcription	NHEK	skin
11	chr9:108062200-108072000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr9:108062200-108076400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr9:108062200-108077400	Weak transcription	Thymus	Thymus
14	chr9:108062200-108084000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr9:108062200-108091400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr9:108062200-108091800	Weak transcription	Aorta	Aorta
17	chr9:108062200-108098800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr9:108062400-108098800	Weak transcription	Spleen	Spleen
19	chr9:108062400-108104600	Weak transcription	Right Ventricle	heart
20	chr9:108062600-108080600	Weak transcription	HepG2	liver
21	chr9:108062600-108081400	Weak transcription	Colonic Mucosa	Colon
22	chr9:108062600-108083000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr9:108062600-108083400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr9:108062600-108090800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr9:108062600-108090800	Weak transcription	Fetal Thymus	thymus
26	chr9:108062600-108091000	Weak transcription	Adipose Nuclei	Adipose
27	chr9:108062600-108091600	Weak transcription	NHDF-Ad	bronchial
28	chr9:108062600-108098600	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr9:108062600-108098800	Weak transcription	Left Ventricle	heart
30	chr9:108062600-108098800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr9:108062800-108072200	Enhancers	Brain Angular Gyrus	brain
32	chr9:108062800-108080800	Weak transcription	A549	lung
33	chr9:108062800-108098400	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr9:108062800-108098800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr9:108063000-108071800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr9:108063000-108074200	Enhancers	Brain Substantia Nigra	brain
37	chr9:108063200-108087400	Weak transcription	Fetal Brain Female	brain
38	chr9:108063800-108087400	Weak transcription	Fetal Lung	lung
39	chr9:108065400-108080600	Weak transcription	Primary B cells from cord blood	blood
40	chr9:108066200-108073400	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr9:108066200-108075200	Weak transcription	Duodenum Mucosa	Duodenum
42	chr9:108066200-108076200	Enhancers	Stomach Mucosa	stomach
43	chr9:108066200-108098600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr9:108066400-108073200	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr9:108068400-108072000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr9:108068400-108075400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr9:108068600-108075200	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr9:108068600-108075400	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr9:108068600-108075800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr9:108068800-108098600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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