Variant report

Variant	rs57879220
Chromosome Location	chr12:8967070-8967071
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs58686817	0.95[AFR][1000 genomes]
rs59020822	0.86[AFR][1000 genomes]
rs59518308	1.00[AFR][1000 genomes]
rs60071759	1.00[AFR][1000 genomes]
rs60578324	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34096	chr12:8927520-8968810	Genic enhancers Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8960000-8972000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:8961400-8969200	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr12:8963000-8970200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr12:8965600-8967200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr12:8965800-8967200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr12:8965800-8967200	Enhancers	Brain Germinal Matrix	brain
7	chr12:8965800-8968400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr12:8966400-8969200	Enhancers	K562	blood
9	chr12:8966600-8967200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr12:8966600-8967200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr12:8966600-8967200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr12:8966800-8968400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr12:8966800-8975600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr12:8967000-8967200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr12:8967000-8967400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr12:8967000-8967600	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr12:8967000-8967800	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr12:8967000-8972000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr12:8967000-8975000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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