Variant report

Variant	rs60071759
Chromosome Location	chr12:8966783-8966784
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:8966691..8968770-chr12:8970773..8972791,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs57047982	1.00[AMR][1000 genomes]
rs57879220	1.00[AFR][1000 genomes]
rs58686817	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58975704	1.00[AMR][1000 genomes]
rs59020822	0.86[AFR][1000 genomes]
rs59518308	1.00[AFR][1000 genomes]
rs60578324	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34096	chr12:8927520-8968810	Genic enhancers Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8960000-8972000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:8961400-8969200	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr12:8963000-8970200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr12:8965600-8967200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr12:8965800-8967200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr12:8965800-8967200	Enhancers	Brain Germinal Matrix	brain
7	chr12:8965800-8968400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr12:8966400-8966800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr12:8966400-8967000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr12:8966400-8969200	Enhancers	K562	blood
11	chr12:8966600-8966800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr12:8966600-8966800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr12:8966600-8967000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr12:8966600-8967000	Enhancers	H9 Cell Line	embryonic stem cell
15	chr12:8966600-8967000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
16	chr12:8966600-8967000	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr12:8966600-8967000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr12:8966600-8967200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr12:8966600-8967200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr12:8966600-8967200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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