Variant report

Variant	rs57886952
Chromosome Location	chr2:212353081-212353082
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:212352611..212354767-chr2:212356529..212358511,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10427364	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12104670	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4278873	0.94[ASN][1000 genomes]
rs4321319	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4494668	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56843217	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59369434	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59546274	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60201104	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61516157	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61631854	0.87[ASN][1000 genomes]
rs62178799	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62178801	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62178802	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62178803	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62178804	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62178805	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62178814	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62178817	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62178818	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62178819	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62178820	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62178821	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62178823	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62178824	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62178825	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62178826	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62178827	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62178830	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6435631	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73985451	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7586077	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000722	chr2:212272622-212465143	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv875778	chr2:212297838-212360994	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv460067	chr2:212313400-212378242	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv584317	chr2:212313400-212378242	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2753335	chr2:212322858-212424019	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv875779	chr2:212340740-212415948	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv875780	chr2:212350245-212415948	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv1010811	chr2:212350641-212416215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv584318	chr2:212351667-212412738	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv528570	chr2:212351667-212413675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv875781	chr2:212351667-212418110	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv470512	chr2:212351667-212428192	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv999487	chr2:212352672-212414582	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	nsv1013164	chr2:212352672-212416215	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212352400-212353200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:212352400-212353200	Enhancers	Brain Anterior Caudate	brain
3	chr2:212352400-212353200	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr2:212352400-212353800	Enhancers	Brain Substantia Nigra	brain
5	chr2:212352800-212362200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:212353000-212363400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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