Variant report

Variant	rs61631854
Chromosome Location	chr2:212377672-212377673
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:212320246..212322831-chr2:212376794..212379145,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10427364	0.94[ASN][1000 genomes]
rs12104670	0.87[ASN][1000 genomes]
rs4278873	0.94[ASN][1000 genomes]
rs4321319	0.94[ASN][1000 genomes]
rs4494668	0.94[ASN][1000 genomes]
rs56843217	0.94[ASN][1000 genomes]
rs57886952	0.87[ASN][1000 genomes]
rs59369434	0.94[ASN][1000 genomes]
rs59546274	0.87[ASN][1000 genomes]
rs60201104	1.00[ASN][1000 genomes]
rs61516157	0.87[ASN][1000 genomes]
rs62178799	0.87[ASN][1000 genomes]
rs62178801	0.87[ASN][1000 genomes]
rs62178802	0.94[ASN][1000 genomes]
rs62178803	0.94[ASN][1000 genomes]
rs62178804	0.94[ASN][1000 genomes]
rs62178805	0.94[ASN][1000 genomes]
rs62178814	0.87[ASN][1000 genomes]
rs62178817	0.83[ASN][1000 genomes]
rs62178818	0.94[ASN][1000 genomes]
rs62178819	0.94[ASN][1000 genomes]
rs62178820	0.94[ASN][1000 genomes]
rs62178821	0.94[ASN][1000 genomes]
rs62178823	0.94[ASN][1000 genomes]
rs62178824	0.94[ASN][1000 genomes]
rs62178825	0.94[ASN][1000 genomes]
rs62178826	0.87[ASN][1000 genomes]
rs62178827	0.94[ASN][1000 genomes]
rs62178830	0.94[ASN][1000 genomes]
rs6435631	0.94[ASN][1000 genomes]
rs73985451	0.94[ASN][1000 genomes]
rs7586077	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000722	chr2:212272622-212465143	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv460067	chr2:212313400-212378242	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv584317	chr2:212313400-212378242	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2753335	chr2:212322858-212424019	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv875779	chr2:212340740-212415948	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv875780	chr2:212350245-212415948	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv1010811	chr2:212350641-212416215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv584318	chr2:212351667-212412738	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv528570	chr2:212351667-212413675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv875781	chr2:212351667-212418110	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv470512	chr2:212351667-212428192	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv999487	chr2:212352672-212414582	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv1013164	chr2:212352672-212416215	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	nsv460068	chr2:212355500-212428192	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	nsv584319	chr2:212355500-212428192	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
16	esv2830116	chr2:212356992-212407077	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
17	nsv998427	chr2:212362134-212414582	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
18	nsv1006545	chr2:212362134-212419865	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
19	nsv875782	chr2:212364807-212395971	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv962536	chr2:212377065-212383716	Flanking Active TSS Enhancers Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212376800-212377800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr2:212377000-212378400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr2:212377400-212377800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr2:212377400-212377800	Enhancers	Brain Hippocampus Middle	brain
5	chr2:212377400-212378400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr2:212377400-212378400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:212377400-212378400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr2:212377600-212378000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:212377600-212378000	Flanking Active TSS	Fetal Kidney	kidney
10	chr2:212377600-212378400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr2:212377600-212378600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:212377600-212378600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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