Variant report

Variant	rs57897284
Chromosome Location	chr13:50818685-50818686
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1149846	0.86[ASN][1000 genomes]
rs11617027	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12050063	0.84[ASN][1000 genomes]
rs17074055	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1924369	0.88[ASN][1000 genomes]
rs2066694	0.92[ASN][1000 genomes]
rs2066695	0.87[ASN][1000 genomes]
rs41369045	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56151151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61962179	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73495890	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs806299	0.90[ASN][1000 genomes]
rs9562953	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9562955	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9568385	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568393	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases
5	nsv832608	chr13:50678628-50888413	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
6	nsv900076	chr13:50710579-50912578	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv561631	chr13:50761619-50846748	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50808400-50818800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr13:50812600-50822600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr13:50815000-50818800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:50817800-50820000	Enhancers	K562	blood
5	chr13:50818000-50819000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr13:50818000-50819200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr13:50818000-50819800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:50818000-50819800	Enhancers	NHLF	lung
9	chr13:50818000-50820000	Enhancers	NHDF-Ad	bronchial
10	chr13:50818200-50818800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr13:50818200-50819000	Enhancers	Aorta	Aorta
12	chr13:50818200-50819000	Enhancers	Stomach Smooth Muscle	stomach
13	chr13:50818200-50819200	Enhancers	Small Intestine	intestine
14	chr13:50818200-50819800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr13:50818200-50819800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr13:50818200-50819800	Enhancers	HUVEC	blood vessel
17	chr13:50818200-50819800	Enhancers	NH-A	brain
18	chr13:50818200-50820000	Enhancers	Hela-S3	cervix
19	chr13:50818200-50820200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr13:50818400-50819000	Enhancers	Fetal Brain Male	brain
21	chr13:50818400-50819200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr13:50818400-50819200	Flanking Active TSS	HepG2	liver
23	chr13:50818400-50819800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr13:50818400-50819800	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr13:50818400-50819800	Enhancers	Duodenum Mucosa	Duodenum
26	chr13:50818400-50819800	Enhancers	GM12878-XiMat	blood
27	chr13:50818400-50819800	Enhancers	HSMMtube	muscle
28	chr13:50818400-50820000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr13:50818400-50820200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr13:50818600-50818800	Enhancers	Muscle Satellite Cultured Cells	--
31	chr13:50818600-50819000	Enhancers	Brain Anterior Caudate	brain
32	chr13:50818600-50819000	Enhancers	Fetal Muscle Trunk	muscle
33	chr13:50818600-50819000	Enhancers	Fetal Muscle Leg	muscle
34	chr13:50818600-50819000	Enhancers	Gastric	stomach
35	chr13:50818600-50819200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr13:50818600-50819200	Enhancers	Lung	lung
37	chr13:50818600-50819200	Enhancers	Psoas Muscle	Psoas
38	chr13:50818600-50819200	Flanking Active TSS	A549	lung
39	chr13:50818600-50819400	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr13:50818600-50819400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr13:50818600-50819400	Enhancers	Esophagus	oesophagus
42	chr13:50818600-50819400	Enhancers	Fetal Stomach	stomach
43	chr13:50818600-50819400	Enhancers	Pancreas	Pancrea
44	chr13:50818600-50819400	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr13:50818600-50819400	Enhancers	Spleen	Spleen
46	chr13:50818600-50819600	Enhancers	Duodenum Smooth Muscle	Duodenum
47	chr13:50818600-50819600	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr13:50818600-50819800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr13:50818600-50819800	Enhancers	Primary T cells fromperipheralblood	blood
50	chr13:50818600-50819800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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