Variant report

Variant	rs9568385
Chromosome Location	chr13:50824452-50824453
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1149846	0.86[ASN][1000 genomes]
rs11617027	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12050063	0.84[ASN][1000 genomes]
rs17074055	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1924369	0.88[ASN][1000 genomes]
rs2066694	0.92[ASN][1000 genomes]
rs2066695	0.87[ASN][1000 genomes]
rs41369045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55810037	0.84[AFR][1000 genomes]
rs55901275	0.84[AFR][1000 genomes]
rs56151151	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56155205	0.84[AFR][1000 genomes]
rs57897284	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61962179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73495890	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs806299	0.90[ASN][1000 genomes]
rs9562953	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9562955	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9568386	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568389	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568393	0.92[AFR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases
5	nsv832608	chr13:50678628-50888413	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
6	nsv900076	chr13:50710579-50912578	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv561631	chr13:50761619-50846748	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50820200-50829200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr13:50822000-50824600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr13:50822800-50824600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
4	chr13:50822800-50825200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr13:50823600-50828600	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr13:50823600-50828600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr13:50823800-50829200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr13:50823800-50829200	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr13:50823800-50829400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr13:50823800-50829600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr13:50824000-50824800	Enhancers	Primary B cells from peripheral blood	blood
12	chr13:50824000-50829200	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr13:50824000-50829400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr13:50824000-50829400	Weak transcription	Fetal Thymus	thymus
15	chr13:50824200-50824600	Enhancers	Primary B cells from cord blood	blood
16	chr13:50824200-50827400	Weak transcription	HepG2	liver
17	chr13:50824200-50829200	Weak transcription	Dnd41	blood
18	chr13:50824200-50829400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr13:50824200-50829600	Weak transcription	Thymus	Thymus
20	chr13:50824400-50824800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr13:50824400-50828400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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