Variant report

Variant	rs55901275
Chromosome Location	chr13:50942945-50942946
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs200221	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs200226	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201774	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201775	1.00[ASN][1000 genomes]
rs201779	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201785	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201787	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201788	1.00[ASN][1000 genomes]
rs201791	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2532978	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41369045	0.84[AFR][1000 genomes]
rs55804586	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55810037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56155205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56222244	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59065901	1.00[ASN][1000 genomes]
rs61962179	0.84[AFR][1000 genomes]
rs9568385	0.84[AFR][1000 genomes]
rs9568393	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50933400-50944600	Weak transcription	Fetal Lung	lung
2	chr13:50933800-50944000	Weak transcription	Primary B cells from cord blood	blood
3	chr13:50939800-50953400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:50940200-50952600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr13:50941000-50951200	Weak transcription	HepG2	liver
6	chr13:50941400-50943400	Weak transcription	Fetal Heart	heart
7	chr13:50941400-50943800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr13:50941600-50952400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr13:50941800-50950200	Weak transcription	Gastric	stomach
10	chr13:50942200-50943000	Enhancers	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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