Variant report

Variant	rs201787
Chromosome Location	chr13:50991800-50991801
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:50696699..50698604-chr13:50990333..50993085,2	MCF-7	breast:
2	chr13:50984955..50986600-chr13:50990801..50992508,2	K562	blood:
3	chr13:50986197..50988129-chr13:50991660..50994011,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs200221	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs200226	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201774	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201775	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs201779	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201785	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201788	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs201791	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2532978	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs369471	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs55804586	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55810037	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55901275	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56155205	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56222244	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59065901	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases
5	nsv832609	chr13:50946577-51065968	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1045237	chr13:50976560-51102386	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50975400-50996200	Weak transcription	Right Ventricle	heart
2	chr13:50981200-50993000	Weak transcription	Fetal Heart	heart
3	chr13:50986800-50994800	Weak transcription	K562	blood
4	chr13:50986800-50995400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr13:50987200-50993200	Weak transcription	Fetal Lung	lung
6	chr13:50987200-50995600	Weak transcription	Fetal Kidney	kidney
7	chr13:50987400-50994000	Weak transcription	HSMMtube	muscle
8	chr13:50987600-50993400	Weak transcription	Fetal Stomach	stomach
9	chr13:50987600-50995200	Weak transcription	NH-A	brain
10	chr13:50987800-50991800	Weak transcription	Thymus	Thymus
11	chr13:50987800-50994000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr13:50988000-50996200	Weak transcription	Aorta	Aorta
13	chr13:50988000-50996200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr13:50988400-50993200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr13:50989600-50993600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr13:50989600-50994000	Weak transcription	Osteobl	bone
17	chr13:50989800-50993600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr13:50991000-50992200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr13:50991200-50992000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr13:50991200-50992000	Enhancers	Fetal Muscle Trunk	muscle
21	chr13:50991600-50992000	Enhancers	Fetal Muscle Leg	muscle
22	chr13:50991600-50992000	Enhancers	Left Ventricle	heart
23	chr13:50991600-50992200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
24	chr13:50991600-50992200	Strong transcription	HepG2	liver
25	chr13:50991600-50992400	Enhancers	Hela-S3	cervix
26	chr13:50991800-50992000	Active TSS	Skeletal Muscle Male	skeletal muscle
27	chr13:50991800-50992400	Enhancers	Fetal Thymus	thymus
28	chr13:50991800-50992400	Enhancers	Thymus	Thymus

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