Variant report

Variant	rs55810037
Chromosome Location	chr13:50988880-50988881
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs200221	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs200226	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201774	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201775	1.00[ASN][1000 genomes]
rs201779	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201785	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201787	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201788	1.00[ASN][1000 genomes]
rs201791	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2532978	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41369045	0.84[AFR][1000 genomes]
rs55804586	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55901275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56155205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56222244	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59065901	1.00[ASN][1000 genomes]
rs61962179	0.84[AFR][1000 genomes]
rs9568385	0.84[AFR][1000 genomes]
rs9568393	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases
5	nsv832609	chr13:50946577-51065968	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1045237	chr13:50976560-51102386	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50975400-50996200	Weak transcription	Right Ventricle	heart
2	chr13:50981200-50993000	Weak transcription	Fetal Heart	heart
3	chr13:50985800-50991200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr13:50985800-50991200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr13:50985800-50991600	Weak transcription	Left Ventricle	heart
6	chr13:50986000-50991600	Weak transcription	HepG2	liver
7	chr13:50986400-50991000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr13:50986400-50991200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr13:50986800-50994800	Weak transcription	K562	blood
10	chr13:50986800-50995400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr13:50987200-50989600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr13:50987200-50993200	Weak transcription	Fetal Lung	lung
13	chr13:50987200-50995600	Weak transcription	Fetal Kidney	kidney
14	chr13:50987400-50994000	Weak transcription	HSMMtube	muscle
15	chr13:50987600-50991600	Weak transcription	Hela-S3	cervix
16	chr13:50987600-50993400	Weak transcription	Fetal Stomach	stomach
17	chr13:50987600-50995200	Weak transcription	NH-A	brain
18	chr13:50987800-50989200	Weak transcription	Osteobl	bone
19	chr13:50987800-50991800	Weak transcription	Thymus	Thymus
20	chr13:50987800-50994000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr13:50988000-50989200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr13:50988000-50996200	Weak transcription	Aorta	Aorta
23	chr13:50988000-50996200	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr13:50988400-50993200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links