Variant report

Variant	rs59065901
Chromosome Location	chr13:50885851-50885852
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:50875600..50878425-chr13:50885363..50886924,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1149863	0.83[AFR][1000 genomes]
rs1269273	0.82[AFR][1000 genomes]
rs17074146	0.82[AFR][1000 genomes]
rs1924374	0.82[AFR][1000 genomes]
rs200221	1.00[ASN][1000 genomes]
rs200226	1.00[ASN][1000 genomes]
rs201774	1.00[ASN][1000 genomes]
rs201775	1.00[ASN][1000 genomes]
rs201779	1.00[ASN][1000 genomes]
rs201785	1.00[ASN][1000 genomes]
rs201787	1.00[ASN][1000 genomes]
rs201788	1.00[ASN][1000 genomes]
rs201791	1.00[ASN][1000 genomes]
rs2532978	1.00[ASN][1000 genomes]
rs55804586	1.00[ASN][1000 genomes]
rs55810037	1.00[ASN][1000 genomes]
rs55901275	1.00[ASN][1000 genomes]
rs56155205	1.00[ASN][1000 genomes]
rs56222244	1.00[ASN][1000 genomes]
rs9535442	0.82[AFR][1000 genomes]
rs9535444	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases
5	nsv832608	chr13:50678628-50888413	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
6	nsv900076	chr13:50710579-50912578	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv561632	chr13:50874346-50912578	Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50883600-50886200	Enhancers	HepG2	liver
2	chr13:50884600-50886000	Enhancers	Dnd41	blood
3	chr13:50884600-50892400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr13:50884600-50892600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr13:50884600-50893000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr13:50884600-50893000	Weak transcription	Thymus	Thymus
7	chr13:50884600-50893200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr13:50885200-50886000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr13:50885200-50886200	Weak transcription	Small Intestine	intestine
10	chr13:50885200-50887400	Weak transcription	Fetal Stomach	stomach
11	chr13:50885200-50892800	Weak transcription	Fetal Thymus	thymus
12	chr13:50885400-50886200	Weak transcription	Primary T cells from cord blood	blood
13	chr13:50885400-50886400	Weak transcription	K562	blood
14	chr13:50885800-50886000	Enhancers	Fetal Lung	lung

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