Variant report

Variant	rs57901427
Chromosome Location	chr4:141896231-141896232
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4956336	1.00[AMR][1000 genomes]
rs6537013	1.00[AMR][1000 genomes]
rs6826361	1.00[AMR][1000 genomes]
rs6827744	1.00[AMR][1000 genomes]
rs984839	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830090	chr4:141770494-141947764	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830091	chr4:141796603-141980546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv880168	chr4:141826780-141900370	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141876800-141905600	Weak transcription	Fetal Kidney	kidney
2	chr4:141877600-141905800	Weak transcription	Fetal Lung	lung
3	chr4:141877800-141913600	Weak transcription	Right Ventricle	heart
4	chr4:141881000-141900800	Weak transcription	Left Ventricle	heart
5	chr4:141888200-141913400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr4:141888400-141897400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:141889400-141903400	Weak transcription	Ovary	ovary
8	chr4:141892800-141901600	Weak transcription	Psoas Muscle	Psoas
9	chr4:141892800-141905400	Weak transcription	Colon Smooth Muscle	Colon
10	chr4:141893400-141899000	Weak transcription	Aorta	Aorta
11	chr4:141894000-141898200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr4:141894000-141902600	Weak transcription	Fetal Heart	heart
13	chr4:141896200-141897600	Strong transcription	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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