Variant report

Variant	rs6537013
Chromosome Location	chr4:141815988-141815989
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4956336	1.00[AMR][1000 genomes]
rs57901427	1.00[AMR][1000 genomes]
rs6826361	1.00[AMR][1000 genomes]
rs6827744	1.00[AMR][1000 genomes]
rs984839	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830090	chr4:141770494-141947764	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv1845859	chr4:141786475-141816657	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv830091	chr4:141796603-141980546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141789600-141831600	Weak transcription	Aorta	Aorta
2	chr4:141799600-141823000	Weak transcription	Ovary	ovary
3	chr4:141808000-141816000	Weak transcription	Left Ventricle	heart
4	chr4:141808200-141826200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:141812800-141816200	Enhancers	Adipose Nuclei	Adipose
6	chr4:141814000-141816800	Enhancers	Fetal Stomach	stomach
7	chr4:141814200-141817000	Enhancers	Rectal Smooth Muscle	rectum
8	chr4:141814400-141816000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:141814400-141816200	Enhancers	Fetal Lung	lung
10	chr4:141814600-141816000	Enhancers	Stomach Smooth Muscle	stomach
11	chr4:141814600-141816400	Enhancers	NHDF-Ad	bronchial
12	chr4:141814600-141816800	Enhancers	Colon Smooth Muscle	Colon
13	chr4:141814800-141816000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr4:141815000-141816000	Weak transcription	Fetal Muscle Leg	muscle
15	chr4:141815000-141816600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:141815000-141823800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr4:141815200-141816400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:141815200-141816800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr4:141815400-141818200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr4:141815600-141816000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr4:141815600-141816400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr4:141815600-141816400	Enhancers	Fetal Brain Male	brain
23	chr4:141815600-141824000	Weak transcription	Fetal Heart	heart
24	chr4:141815800-141816200	Enhancers	Duodenum Smooth Muscle	Duodenum

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