Variant report

Variant	rs57907925
Chromosome Location	chr5:74916972-74916973
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:74915137..74918881-chr5:74947780..74950531,3	K562	blood:
2	chr5:74913060..74915078-chr5:74915803..74919443,3	K562	blood:
3	chr5:74915137..74917681-chr5:74948612..74950531,2	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10036682	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10038945	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10041470	0.89[EUR][1000 genomes]
rs10055011	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10059022	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10061689	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10067900	0.85[EUR][1000 genomes]
rs10074747	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10076819	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10077427	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10078671	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10474437	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12173076	0.81[EUR][1000 genomes]
rs13360099	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13361353	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1469051	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1553234	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1820049	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1909719	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2287710	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs253410	0.84[ASN][1000 genomes]
rs28408106	0.85[EUR][1000 genomes]
rs28612248	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28668361	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28874007	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34339	0.84[ASN][1000 genomes]
rs34342	0.84[ASN][1000 genomes]
rs34343	0.84[ASN][1000 genomes]
rs3804231	0.85[EUR][1000 genomes]
rs4703675	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4704229	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56859362	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5744544	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs5744545	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs5744636	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5744667	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5744704	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5744709	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5744712	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58841453	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6891560	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72633965	0.85[EUR][1000 genomes]
rs72633967	0.87[EUR][1000 genomes]
rs72633968	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72633969	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72633970	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72633971	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72633972	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72633973	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72633974	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72633975	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72633976	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72633977	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7726478	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs904743	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9293652	0.85[EUR][1000 genomes]
rs9293654	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9293655	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs979182	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882193	chr5:74656175-74917862	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv882194	chr5:74656175-74946455	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv882196	chr5:74678937-74917862	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv882197	chr5:74692776-74946455	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv882199	chr5:74757758-74946455	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv882202	chr5:74808417-74946455	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv518475	chr5:74863041-75411804	Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
9	esv1850196	chr5:74890618-75138443	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74907800-74921400	Weak transcription	Aorta	Aorta
2	chr5:74907800-74921400	Weak transcription	Lung	lung
3	chr5:74908200-74918800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr5:74908200-74919600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:74908200-74923600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr5:74908600-74918000	Weak transcription	Small Intestine	intestine
7	chr5:74908600-74920400	Enhancers	Fetal Intestine Small	intestine
8	chr5:74912600-74917200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:74913600-74918400	Weak transcription	HSMM	muscle
10	chr5:74913800-74918200	Weak transcription	Colonic Mucosa	Colon
11	chr5:74913800-74919800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr5:74913800-74921400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:74913800-74921600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr5:74913800-74922400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr5:74913800-74922800	Weak transcription	Ovary	ovary
16	chr5:74913800-74923600	Weak transcription	Esophagus	oesophagus
17	chr5:74913800-74923600	Weak transcription	Fetal Muscle Leg	muscle
18	chr5:74913800-74933600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr5:74914000-74917800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr5:74914000-74918200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr5:74914000-74918200	Weak transcription	NH-A	brain
22	chr5:74914000-74919400	Weak transcription	HSMMtube	muscle
23	chr5:74914000-74919800	Weak transcription	Fetal Stomach	stomach
24	chr5:74914000-74923400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr5:74914000-74930800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr5:74914200-74919400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr5:74915000-74925800	Weak transcription	Fetal Muscle Trunk	muscle
28	chr5:74915400-74917000	Enhancers	NHEK	skin
29	chr5:74915400-74917200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr5:74915400-74917400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr5:74915400-74917400	Enhancers	Fetal Intestine Large	intestine
32	chr5:74915600-74918400	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr5:74915600-74921800	Enhancers	Stomach Mucosa	stomach
34	chr5:74915800-74917400	Enhancers	HepG2	liver
35	chr5:74915800-74920000	Enhancers	Duodenum Mucosa	Duodenum
36	chr5:74916000-74917400	Enhancers	Liver	Liver
37	chr5:74916200-74917000	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr5:74916400-74917800	Weak transcription	HMEC	breast
39	chr5:74916600-74917000	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr5:74916600-74917000	Enhancers	Gastric	stomach
41	chr5:74916600-74917000	Enhancers	Pancreas	Pancrea
42	chr5:74916600-74917400	Enhancers	Sigmoid Colon	Sigmoid Colon
43	chr5:74916600-74931800	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr5:74916800-74917200	Enhancers	Placenta	Placenta
45	chr5:74916800-74918400	Weak transcription	A549	lung
46	chr5:74916800-74919600	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links