Variant report

Variant	rs10036682
Chromosome Location	chr5:74905046-74905047
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CUX1	chr5:74904843-74905061	K562	blood:	n/a	n/a
2	TAL1	chr5:74904710-74905082	K562	blood:	n/a	chr5:74904900-74904918

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANKDD1B-2	chr5:74904642-74905808	ENSG00000272040.1

Variant related genes	Relation type
ANKDD1B	TF binding region

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10038945	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10041470	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10055011	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10059022	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10061689	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10067900	0.89[EUR][1000 genomes]
rs10074747	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10076819	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10077427	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10078671	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10474437	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12173076	0.85[EUR][1000 genomes]
rs13360099	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13361353	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1469051	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1553234	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1820049	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909719	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2287710	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs253410	0.85[ASN][1000 genomes]
rs28408106	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28612248	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28668361	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28874007	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34339	0.85[ASN][1000 genomes]
rs34342	0.85[ASN][1000 genomes]
rs34343	0.85[ASN][1000 genomes]
rs34349	0.80[ASN][1000 genomes]
rs3804231	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4703675	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4704213	0.89[EUR][1000 genomes]
rs4704229	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56859362	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5744544	0.90[EUR][1000 genomes]
rs5744545	0.89[EUR][1000 genomes]
rs5744636	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5744667	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5744704	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5744709	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5744712	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57907925	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58841453	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6891560	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72633965	0.89[EUR][1000 genomes]
rs72633966	0.82[EUR][1000 genomes]
rs72633967	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72633968	0.88[EUR][1000 genomes]
rs72633969	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72633970	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72633971	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72633972	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72633973	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72633974	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72633975	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72633976	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72633977	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7356633	0.89[EUR][1000 genomes]
rs7726478	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs904743	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9293652	0.89[EUR][1000 genomes]
rs9293654	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9293655	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs979182	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882193	chr5:74656175-74917862	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv882194	chr5:74656175-74946455	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv882196	chr5:74678937-74917862	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv882197	chr5:74692776-74946455	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv882199	chr5:74757758-74946455	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv882202	chr5:74808417-74946455	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv518475	chr5:74863041-75411804	Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
9	esv1850196	chr5:74890618-75138443	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74833400-74906800	Weak transcription	Brain Substantia Nigra	brain
2	chr5:74862800-74907200	Weak transcription	Esophagus	oesophagus
3	chr5:74863600-74905800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:74863800-74906800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr5:74864000-74907000	Weak transcription	Psoas Muscle	Psoas
6	chr5:74865800-74906800	Weak transcription	Colonic Mucosa	Colon
7	chr5:74867600-74907200	Weak transcription	Small Intestine	intestine
8	chr5:74873600-74907000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr5:74875200-74907000	Weak transcription	Right Ventricle	heart
10	chr5:74879000-74907000	Weak transcription	HepG2	liver
11	chr5:74889800-74906200	Weak transcription	Fetal Intestine Small	intestine
12	chr5:74889800-74906800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr5:74889800-74907200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr5:74890400-74907000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr5:74892800-74907000	Weak transcription	Colon Smooth Muscle	Colon
16	chr5:74893200-74906800	Weak transcription	Stomach Mucosa	stomach
17	chr5:74894400-74908200	Weak transcription	GM12878-XiMat	blood
18	chr5:74896600-74907000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr5:74896600-74907000	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr5:74896600-74907000	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr5:74896600-74907200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr5:74896800-74907000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr5:74897000-74906800	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr5:74897200-74906800	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr5:74897800-74907000	Weak transcription	Gastric	stomach
26	chr5:74898200-74905400	Weak transcription	A549	lung
27	chr5:74898200-74906600	Weak transcription	Liver	Liver
28	chr5:74898200-74906800	Weak transcription	Brain Hippocampus Middle	brain
29	chr5:74898200-74906800	Weak transcription	Fetal Brain Female	brain
30	chr5:74898200-74906800	Weak transcription	Ovary	ovary
31	chr5:74898200-74906800	Weak transcription	Pancreas	Pancrea
32	chr5:74898200-74906800	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr5:74898200-74907000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr5:74898200-74907000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr5:74898200-74907000	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr5:74898200-74907000	Weak transcription	NHDF-Ad	bronchial
37	chr5:74898200-74907200	Weak transcription	Spleen	Spleen
38	chr5:74898400-74906400	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr5:74898400-74906800	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr5:74898400-74906800	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr5:74898400-74907000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr5:74898400-74907000	Weak transcription	Fetal Intestine Large	intestine
43	chr5:74898400-74907000	Weak transcription	Fetal Muscle Trunk	muscle
44	chr5:74898400-74907000	Weak transcription	Stomach Smooth Muscle	stomach
45	chr5:74898400-74907200	Weak transcription	Lung	lung
46	chr5:74898400-74907200	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr5:74898400-74907200	Weak transcription	Thymus	Thymus
48	chr5:74898600-74907000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr5:74898600-74907000	Weak transcription	Brain Germinal Matrix	brain
50	chr5:74898800-74907000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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