Variant report

Variant	rs7356633
Chromosome Location	chr5:74683455-74683456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10036682	0.89[EUR][1000 genomes]
rs10038945	0.89[EUR][1000 genomes]
rs10041470	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10055011	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10059022	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10061689	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10067900	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10076819	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10077427	0.93[EUR][1000 genomes]
rs10078671	0.89[EUR][1000 genomes]
rs10474437	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12173076	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13360099	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13361353	0.93[EUR][1000 genomes]
rs1469051	0.85[EUR][1000 genomes]
rs1553234	0.93[EUR][1000 genomes]
rs1909719	0.93[EUR][1000 genomes]
rs2287710	0.88[EUR][1000 genomes]
rs28408106	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28612248	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28668361	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs28874007	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3804231	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4703671	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4703675	0.89[EUR][1000 genomes]
rs4704213	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4704229	0.87[EUR][1000 genomes]
rs56859362	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs5744544	0.88[EUR][1000 genomes]
rs5744545	0.86[EUR][1000 genomes]
rs5744636	0.93[EUR][1000 genomes]
rs5744667	0.87[EUR][1000 genomes]
rs5744704	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs5744709	0.88[EUR][1000 genomes]
rs5744712	0.88[EUR][1000 genomes]
rs58519566	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58841453	0.89[EUR][1000 genomes]
rs61303403	0.81[EUR][1000 genomes]
rs6891560	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72633963	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72633964	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72633965	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72633966	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72633967	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72633968	0.90[EUR][1000 genomes]
rs72633969	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72633970	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72633971	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72633972	0.91[EUR][1000 genomes]
rs72633973	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72633974	0.93[EUR][1000 genomes]
rs72633975	0.89[EUR][1000 genomes]
rs72633976	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7726478	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9293652	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9293654	0.88[EUR][1000 genomes]
rs9293655	0.91[EUR][1000 genomes]
rs979182	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882192	chr5:74641707-74707762	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv882193	chr5:74656175-74917862	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv882194	chr5:74656175-74946455	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv882195	chr5:74678937-74896798	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv882196	chr5:74678937-74917862	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74656400-74687200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:74656400-74725600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr5:74656600-74694800	Weak transcription	Brain Angular Gyrus	brain
4	chr5:74656800-74731400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr5:74657800-74708000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr5:74659800-74684800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr5:74659800-74720600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr5:74660000-74722800	Weak transcription	Fetal Heart	heart
9	chr5:74660200-74707800	Weak transcription	Stomach Mucosa	stomach
10	chr5:74661800-74683600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:74665000-74703000	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr5:74667000-74723200	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr5:74667200-74688200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr5:74667200-74693600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr5:74667600-74687600	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr5:74668000-74688400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr5:74668200-74686200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr5:74668400-74685600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:74668600-74686800	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr5:74668600-74687200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr5:74668600-74687600	Strong transcription	Adipose Nuclei	Adipose
22	chr5:74668600-74687600	Strong transcription	Fetal Lung	lung
23	chr5:74668600-74691200	Strong transcription	Liver	Liver
24	chr5:74668800-74685800	Strong transcription	Primary B cells from peripheral blood	blood
25	chr5:74670800-74709400	Weak transcription	Pancreas	Pancrea
26	chr5:74670800-74720600	Weak transcription	Right Ventricle	heart
27	chr5:74670800-74731400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr5:74671000-74686000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr5:74671000-74722800	Weak transcription	Hela-S3	cervix
30	chr5:74671600-74686000	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr5:74671800-74684200	Strong transcription	Primary hematopoietic stem cells	blood
32	chr5:74672200-74687000	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr5:74673200-74685200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr5:74673200-74685800	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr5:74673200-74685800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr5:74673200-74685800	Strong transcription	Dnd41	blood
37	chr5:74673200-74686000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr5:74673400-74685800	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr5:74673400-74686000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr5:74674400-74688000	Weak transcription	NHEK	skin
41	chr5:74674400-74761400	Weak transcription	Esophagus	oesophagus
42	chr5:74675400-74694800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr5:74675400-74699600	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr5:74675400-74720800	Weak transcription	Small Intestine	intestine
45	chr5:74676200-74695000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr5:74676200-74721000	Weak transcription	Brain Hippocampus Middle	brain
47	chr5:74677000-74701000	Weak transcription	A549	lung
48	chr5:74677400-74722800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr5:74677600-74693600	Weak transcription	Colon Smooth Muscle	Colon
50	chr5:74677600-74709200	Weak transcription	Gastric	stomach

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