Variant report

Variant	rs72633964
Chromosome Location	chr5:74673317-74673318
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10038945	0.89[EUR][1000 genomes]
rs10041470	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10055011	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10059022	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10061689	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10067900	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10076819	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10077427	0.93[EUR][1000 genomes]
rs10474437	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12173076	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13360099	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13361353	0.93[EUR][1000 genomes]
rs1469051	0.85[EUR][1000 genomes]
rs1553234	0.93[EUR][1000 genomes]
rs1909719	0.93[EUR][1000 genomes]
rs28408106	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28612248	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28874007	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3804231	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4703671	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4704213	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56859362	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5744544	0.88[EUR][1000 genomes]
rs5744545	0.86[EUR][1000 genomes]
rs5744636	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs5744667	0.87[EUR][1000 genomes]
rs5744704	0.89[EUR][1000 genomes]
rs5744709	0.88[EUR][1000 genomes]
rs5744712	0.88[EUR][1000 genomes]
rs58519566	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61303403	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6891560	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72633963	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72633965	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72633966	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72633967	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72633968	0.90[EUR][1000 genomes]
rs72633969	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72633970	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72633971	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72633972	0.91[EUR][1000 genomes]
rs72633973	0.93[EUR][1000 genomes]
rs72633974	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7356633	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7726478	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9293652	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9293654	0.88[EUR][1000 genomes]
rs9293655	0.91[EUR][1000 genomes]
rs979182	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882192	chr5:74641707-74707762	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv882193	chr5:74656175-74917862	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv882194	chr5:74656175-74946455	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74656400-74673600	Weak transcription	Psoas Muscle	Psoas
2	chr5:74656400-74673600	Weak transcription	Small Intestine	intestine
3	chr5:74656400-74673600	Weak transcription	Spleen	Spleen
4	chr5:74656400-74674000	Weak transcription	Brain Germinal Matrix	brain
5	chr5:74656400-74674800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr5:74656400-74674800	Weak transcription	Brain Substantia Nigra	brain
7	chr5:74656400-74676800	Weak transcription	Fetal Brain Male	brain
8	chr5:74656400-74687200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr5:74656400-74725600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr5:74656600-74675600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr5:74656600-74675800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr5:74656600-74675800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr5:74656600-74676800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr5:74656600-74677200	Weak transcription	Aorta	Aorta
15	chr5:74656600-74694800	Weak transcription	Brain Angular Gyrus	brain
16	chr5:74656800-74676200	Weak transcription	Colonic Mucosa	Colon
17	chr5:74656800-74731400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr5:74657400-74674800	Weak transcription	A549	lung
19	chr5:74657600-74673600	Weak transcription	Lung	lung
20	chr5:74657800-74708000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr5:74658000-74674800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr5:74658600-74674800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr5:74658600-74674800	Weak transcription	Fetal Kidney	kidney
24	chr5:74659000-74674600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr5:74659200-74674800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr5:74659600-74673600	Weak transcription	Esophagus	oesophagus
27	chr5:74659600-74673600	Weak transcription	Gastric	stomach
28	chr5:74659600-74675800	Weak transcription	Brain Hippocampus Middle	brain
29	chr5:74659800-74673600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr5:74659800-74677000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr5:74659800-74684800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr5:74659800-74720600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr5:74660000-74674600	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr5:74660000-74722800	Weak transcription	Fetal Heart	heart
35	chr5:74660200-74673600	Weak transcription	Fetal Muscle Leg	muscle
36	chr5:74660200-74707800	Weak transcription	Stomach Mucosa	stomach
37	chr5:74660400-74673600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr5:74661800-74683600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr5:74663200-74676800	Weak transcription	K562	blood
40	chr5:74664600-74674400	Weak transcription	NH-A	brain
41	chr5:74664600-74674600	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr5:74664600-74676800	Weak transcription	NHLF	lung
43	chr5:74664600-74677000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr5:74664800-74677000	Weak transcription	HUVEC	blood vessel
45	chr5:74665000-74703000	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr5:74667000-74723200	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr5:74667200-74688200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr5:74667200-74693600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr5:74667600-74687600	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr5:74668000-74688400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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