Variant report

Variant	rs72633963
Chromosome Location	chr5:74630829-74630830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:74630357-74630833	HepG2	liver:	n/a	n/a
2	HEY1	chr5:74630347-74631695	HepG2	liver:	n/a	n/a
3	POLR2A	chr5:74630261-74635036	HepG2	liver:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:74630713..74633733-chr5:74805590..74808087,5	MCF-7	breast:
2	chr5:74623256..74625820-chr5:74629134..74632022,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-COL4A3BP-1	chr5:74630772-74630863	ENSG00000247372.2

No data

Variant related genes	Relation type
HMGCR	TF binding region
ENSG00000122008	Chromatin interaction
ENSG00000113163	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10041470	0.85[EUR][1000 genomes]
rs10055011	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10059022	0.85[EUR][1000 genomes]
rs10061689	0.81[ASN][1000 genomes]
rs10067900	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10076819	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10077427	0.83[EUR][1000 genomes]
rs10474437	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12173076	0.81[EUR][1000 genomes]
rs13360099	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1553234	0.83[EUR][1000 genomes]
rs28408106	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28612248	0.81[ASN][1000 genomes]
rs28874007	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3804231	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4703671	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4704213	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56859362	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58519566	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61303403	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6891560	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72633964	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72633965	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72633966	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72633967	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72633969	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72633970	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72633971	0.81[ASN][1000 genomes]
rs72633972	0.81[EUR][1000 genomes]
rs72633973	0.83[EUR][1000 genomes]
rs7356633	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7726478	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9293652	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74619000-74631400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:74619400-74632200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:74621000-74632200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:74621600-74631200	Weak transcription	A549	lung
5	chr5:74626000-74631800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:74626400-74631400	Weak transcription	K562	blood
7	chr5:74627600-74631400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:74627800-74631600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr5:74628000-74631200	Weak transcription	Fetal Intestine Small	intestine
10	chr5:74628000-74631800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr5:74628200-74631200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr5:74628400-74631400	Weak transcription	Liver	Liver
13	chr5:74628400-74632000	Weak transcription	Stomach Mucosa	stomach
14	chr5:74628800-74631000	Weak transcription	HepG2	liver
15	chr5:74629200-74631600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr5:74629400-74631800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr5:74630400-74631600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr5:74630800-74631000	Enhancers	Primary monocytes fromperipheralblood	blood

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