Variant report

Variant	rs57916745
Chromosome Location	chr6:56203409-56203410
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11961222	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11967497	0.82[ASN][1000 genomes]
rs6910020	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6910900	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6914946	0.90[ASN][1000 genomes]
rs6915751	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6932919	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6934864	0.81[ASN][1000 genomes]
rs6935262	0.82[ASN][1000 genomes]
rs6938339	0.90[ASN][1000 genomes]
rs73448988	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73448990	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73450719	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73450723	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73461020	0.81[ASN][1000 genomes]
rs7739763	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7739952	0.90[ASN][1000 genomes]
rs7750835	0.90[ASN][1000 genomes]
rs7760392	0.90[ASN][1000 genomes]
rs7775154	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56194400-56203600	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:56201000-56210000	Weak transcription	Osteobl	bone
3	chr6:56201200-56207600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:56201400-56207600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:56202400-56206400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:56203200-56204200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:56203400-56204800	Enhancers	Rectal Smooth Muscle	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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