Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr6:56200517-56201405	Hela-S3	cervix:	n/a	chr6:56200779-56200789 chr6:56200779-56200789

Variant related genes	Relation type
ENSG00000227602	TF binding region

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11961222	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11967497	1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs4532443	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4636028	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs57916745	0.90[ASN][1000 genomes]
rs6910020	1.00[ASN][1000 genomes]
rs6910900	1.00[ASN][1000 genomes]
rs6914946	1.00[ASN][1000 genomes]
rs6915751	1.00[ASN][1000 genomes]
rs6932919	1.00[ASN][1000 genomes]
rs6934864	0.91[ASN][1000 genomes]
rs6935262	0.92[ASN][1000 genomes]
rs73448988	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73448990	1.00[ASN][1000 genomes]
rs73450719	1.00[ASN][1000 genomes]
rs73450723	1.00[ASN][1000 genomes]
rs73461020	0.91[ASN][1000 genomes]
rs7739763	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7739952	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7750835	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7760392	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775154	0.92[ASN][1000 genomes]
rs9396202	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56194400-56203600	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:56199000-56201400	Enhancers	NHDF-Ad	bronchial
3	chr6:56199000-56201400	Enhancers	NHEK	skin
4	chr6:56199000-56201800	Enhancers	HMEC	breast
5	chr6:56199200-56201400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:56199200-56201400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:56199400-56201800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr6:56199600-56202400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:56200600-56202000	Enhancers	Hela-S3	cervix
10	chr6:56201000-56201400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:56201000-56203200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:56201000-56210000	Weak transcription	Osteobl	bone
13	chr6:56201200-56207600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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