Variant report

Variant	rs57922269
Chromosome Location	chr12:10340905-10340906
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17808107	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17808113	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17808125	0.91[EUR][1000 genomes]
rs4763454	0.86[EUR][1000 genomes]
rs73056040	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73056073	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73057956	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7975181	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10336000-10342600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:10336000-10343200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr12:10337200-10341800	Weak transcription	Placenta	Placenta
4	chr12:10337200-10343200	Weak transcription	Fetal Lung	lung
5	chr12:10337200-10350400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr12:10337400-10342200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr12:10337400-10344200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr12:10337600-10342200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr12:10338200-10342200	Weak transcription	NHLF	lung
10	chr12:10339200-10342400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr12:10339200-10342400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr12:10339400-10341000	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr12:10339400-10342200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr12:10339400-10347800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr12:10340000-10343200	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr12:10340200-10343400	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr12:10340600-10341000	Enhancers	Gastric	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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