Variant report

Variant	rs7975181
Chromosome Location	chr12:10346069-10346070
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17808107	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17808113	0.96[EUR][1000 genomes]
rs17808125	0.88[EUR][1000 genomes]
rs4763454	0.83[EUR][1000 genomes]
rs57922269	0.97[EUR][1000 genomes]
rs73056040	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73056073	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73057956	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10337200-10350400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:10339400-10347800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr12:10345000-10347000	Weak transcription	Osteobl	bone
4	chr12:10345200-10346600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr12:10345200-10346600	Weak transcription	Hela-S3	cervix
6	chr12:10345200-10347000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr12:10345200-10347200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr12:10345200-10349000	Weak transcription	NHLF	lung
9	chr12:10345400-10346800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr12:10345400-10346800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr12:10345400-10347000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr12:10345400-10348400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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