Variant report

Variant	rs57928330
Chromosome Location	chr1:175037222-175037223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11805690	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11808695	1.00[ASN][1000 genomes]
rs4651307	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4651308	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61742080	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6658058	1.00[ASN][1000 genomes]
rs6675759	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6686400	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6691555	1.00[ASN][1000 genomes]
rs6691857	1.00[ASN][1000 genomes]
rs6703323	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73044972	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73044981	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7543595	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011472	chr1:175013165-175042885	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1012861	chr1:175021780-175063160	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv535210	chr1:175021780-175063160	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv825487	chr1:175031609-175113572	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175036400-175037600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr1:175036800-175037400	Active TSS	Adipose Nuclei	Adipose
3	chr1:175036800-175041000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr1:175037200-175038600	Weak transcription	Fetal Muscle Leg	muscle
5	chr1:175037200-175040200	Weak transcription	Fetal Stomach	stomach
6	chr1:175037200-175040600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr1:175037200-175041000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr1:175037200-175041000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr1:175037200-175041000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:175037200-175041400	Weak transcription	Fetal Muscle Trunk	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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