Variant report

Variant	rs6686400
Chromosome Location	chr1:175006684-175006685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11805690	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11808695	1.00[ASN][1000 genomes]
rs4651307	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4651308	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57928330	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61742080	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6658058	1.00[ASN][1000 genomes]
rs6675759	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6691555	1.00[ASN][1000 genomes]
rs6691857	1.00[ASN][1000 genomes]
rs6703323	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73044972	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73044981	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7543595	1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6686400	RC3H1	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174993200-175013800	Weak transcription	Spleen	Spleen
2	chr1:175005200-175010000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:175006200-175012000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:175006400-175006800	Enhancers	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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